Gene name: LSM8
Reference locus (S288C): YJR022W
Gene biotype: protein_coding
Description: U6 snRNA-associated Sm-like protein LSm8; Lsm (Like Sm) protein; forms heteroheptameric complex (with Lsm2p, Lsm3p, Lsm4p, Lsm5p, Lsm6p, and Lsm7p) that is part of spliceosomal U6 snRNP and is also implicated in processing of pre-tRNA, pre-snoRNA, and pre-rRNA
Top 10 interactors (score): SNU66 (0.999); SMD2 (0.999); PRP6 (0.999); SMB1 (0.999); SMD3 (0.999); LSM5 (0.999); PRP8 (0.999); BRR2 (0.999); LSM2 (0.999); SNU114 (0.999); SMX2 (0.999); SMX3 (0.999); LSM4 (0.999); SMD1 (0.999); LSM6 (0.999); PRP4 (0.999); PRP3 (0.999); LSM3 (0.999); PRP24 (0.999); LSM1 (0.999)
Homologues (species, bitscore): LSM8 (Homo sapiens, 53.1); Lsm8 (Mus musculus, 53.1); lsm8 (Danio rerio, 51.6)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005304.1:452941-453270:+ | gene-YJR022W_AKU4011 | rna-NM_001181680.1_AKU4011 | cds-NP_012556.2_AKU4011 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000190.1:159458-159787:- | gene-YJR022W_BG1 | rna-NM_001181680.1_BG1 | cds-NP_012556.2_BG1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005512.1:467026-467355:+ | gene-YJR022W_Bruggeman | rna-NM_001181680.1_Bruggeman | cds-NP_012556.2_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005528.1:470979-471308:+ | gene-YJR022W_CAT1 | rna-NM_001181680.1_CAT1 | cds-NP_012556.2_CAT1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005368.1:464530-464859:+ | gene-YJR022W_CBS1585 | rna-NM_001181680.1_CBS1585 | cds-NP_012556.2_CBS1585 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005352.1:483496-483825:+ | gene-YJR022W_CBS436 | rna-NM_001181680.1_CBS436 | cds-NP_012556.2_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005336.1:452760-453089:+ | gene-YJR022W_CBS6412 | rna-NM_001181680.1_CBS6412 | cds-NP_012556.2_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005320.1:454983-455312:+ | gene-YJR022W_CBS6413 | rna-NM_001181680.1_CBS6413 | cds-NP_012556.2_CBS6413 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001531.1:452267-452596:+ | gene-YJR022W_CENPK1137D | rna-NM_001181680.1_CENPK1137D | cds-NP_012556.2_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005480.1:457920-458249:+ | gene-YJR022W_EthanolRed | rna-NM_001181680.1_EthanolRed | cds-NP_012556.2_EthanolRed | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005544.1:469137-469466:+ | gene-YJR022W_FaliES1 | rna-NM_001181680.1_FaliES1 | cds-NP_012556.2_FaliES1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000384.1:15382-15711:+ | gene-YJR022W_JAY291 | rna-NM_001181680.1_JAY291 | cds-NP_012556.2_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005416.1:467309-467638:+ | gene-YJR022W_MUCL30387 | rna-NM_001181680.1_MUCL30387 | cds-NP_012556.2_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005448.1:463878-464207:+ | gene-YJR022W_MUCL30388 | rna-NM_001181680.1_MUCL30388 | cds-NP_012556.2_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005288.1:457984-458313:+ | gene-YJR022W_MUCL39482 | rna-NM_001181680.1_MUCL39482 | cds-NP_012556.2_MUCL39482 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005432.1:463289-463618:+ | gene-YJR022W_MUCL42920 | rna-NM_001181680.1_MUCL42920 | cds-NP_012556.2_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011819.1:469763-470092:+ | gene-YJR022W_NCIM3186 | rna-NM_001181680.1_NCIM3186 | cds-NP_012556.2_NCIM3186 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005272.1:455841-456170:+ | gene-YJR022W_NCYC1407 | rna-NM_001181680.1_NCYC1407 | cds-NP_012556.2_NCYC1407 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994149.1:474160-474489:+ | gene-YJR022W_PE2H3 | rna-NM_001181680.1_PE2H3 | cds-NP_012556.2_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999881.1:467856-468185:+ | gene-YJR022W_PE2H4 | rna-NM_001181680.1_PE2H4 | cds-NP_012556.2_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001142.9:469784-470113:+ | gene-YJR022W_S288C | rna-NM_001181680.1_S288C | cds-NP_012556.2_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000003.1:265786-266115:+ | gene-YJR022W_SA1 | rna-NM_001181680.1_SA1 | cds-NP_012556.2_SA1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005496.1:462786-463115:+ | gene-YJR022W_ThermosaccDry | rna-NM_001181680.1_ThermosaccDry | cds-NP_012556.2_ThermosaccDry | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005464.1:465069-465398:+ | gene-YJR022W_VR1 | rna-NM_001181680.1_VR1 | cds-NP_012556.2_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000021.1:442713-443042:+ | gene-YJR022W_ZTW1 | rna-NM_001181680.1_ZTW1 | cds-NP_012556.2_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047496.1:467521-467850:+ | gene-YJR022W_Sparadoxus | rna-NM_001181680.1_Sparadoxus | cds-NP_012556.2_Sparadoxus | 90.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |