Gene name: LSM7
Reference locus (S288C): YNL147W
Gene biotype: protein_coding
Description: U6 snRNA-associated Sm-like protein LSm7; Lsm (Like Sm) protein; part of heteroheptameric complexes (Lsm2p-7p and either Lsm1p or 8p): cytoplasmic Lsm1p complex involved in mRNA decay; nuclear Lsm8p complex part of U6 snRNP and possibly involved in processing tRNA, snoRNA, and rRNA; protein abundance increases and forms cytoplasmic foci in response to DNA replication stress
Top 10 interactors (score): SMD3 (0.999); SMB1 (0.999); LSM5 (0.999); LSM6 (0.999); SMD1 (0.999); CLF1 (0.999); LSM4 (0.999); SME1 (0.999); PAT1 (0.999); LSM3 (0.999); PRP24 (0.999); LSM1 (0.999); PRP4 (0.999); DIB1 (0.999); SNU66 (0.999); SMD2 (0.999); SMX2 (0.999); LSM2 (0.999); LSM8 (0.999); SMX3 (0.999)
Homologues (species, bitscore): LSM7 (Homo sapiens, 90.1); Lsm7 (Mus musculus, 89.4); lsm7 (Danio rerio, 89.7); lsm7 (Xenopus tropicalis, 90.9); LSm7 (Drosophila melanogaster, 83.6); lsm-7 (Caenorhabditis elegans, 84.3); EMB2816 (Arabidopsis thaliana, 84.0)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005308.1:344661-345104:+ | gene-YNL147W_AKU4011 | rna-NM_001182985.1_AKU4011 | cds-NP_014252.2_AKU4011 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000155.1:248681-249124:+ | gene-YNL147W_BG1 | rna-NM_001182985.1_BG1 | cds-NP_014252.2_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005516.1:354729-355172:+ | gene-YNL147W_Bruggeman | rna-NM_001182985.1_Bruggeman | cds-NP_014252.2_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005532.1:397646-398089:+ | gene-YNL147W_CAT1 | rna-NM_001182985.1_CAT1 | cds-NP_014252.2_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005372.1:345311-345754:+ | gene-YNL147W_CBS1585 | rna-NM_001182985.1_CBS1585 | cds-NP_014252.2_CBS1585 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005356.1:413661-414104:+ | gene-YNL147W_CBS436 | rna-NM_001182985.1_CBS436 | cds-NP_014252.2_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005340.1:340717-341160:+ | gene-YNL147W_CBS6412 | rna-NM_001182985.1_CBS6412 | cds-NP_014252.2_CBS6412 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005324.1:341745-342188:+ | gene-YNL147W_CBS6413 | rna-NM_001182985.1_CBS6413 | cds-NP_014252.2_CBS6413 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001535.1:344786-345229:+ | gene-YNL147W_CENPK1137D | rna-NM_001182985.1_CENPK1137D | cds-NP_014252.2_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005484.1:341646-342089:+ | gene-YNL147W_EthanolRed | rna-NM_001182985.1_EthanolRed | cds-NP_014252.2_EthanolRed | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005548.1:337559-338002:+ | gene-YNL147W_FaliES1 | rna-NM_001182985.1_FaliES1 | cds-NP_014252.2_FaliES1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000439.1:5657-6100:- | gene-YNL147W_JAY291 | rna-NM_001182985.1_JAY291 | cds-NP_014252.2_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005420.1:350797-351240:+ | gene-YNL147W_MUCL30387 | rna-NM_001182985.1_MUCL30387 | cds-NP_014252.2_MUCL30387 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005452.1:385349-385792:+ | gene-YNL147W_MUCL30388 | rna-NM_001182985.1_MUCL30388 | cds-NP_014252.2_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005292.1:342551-342994:+ | gene-YNL147W_MUCL39482 | rna-NM_001182985.1_MUCL39482 | cds-NP_014252.2_MUCL39482 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005436.1:345558-346001:+ | gene-YNL147W_MUCL42920 | rna-NM_001182985.1_MUCL42920 | cds-NP_014252.2_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011823.1:350909-351352:+ | gene-YNL147W_NCIM3186 | rna-NM_001182985.1_NCIM3186 | cds-NP_014252.2_NCIM3186 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005276.1:344645-345088:+ | gene-YNL147W_NCYC1407 | rna-NM_001182985.1_NCYC1407 | cds-NP_014252.2_NCYC1407 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994153.1:341641-342084:+ | gene-YNL147W_PE2H3 | rna-NM_001182985.1_PE2H3 | cds-NP_014252.2_PE2H3 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999885.1:341029-341472:+ | gene-YNL147W_PE2H4 | rna-NM_001182985.1_PE2H4 | cds-NP_014252.2_PE2H4 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001146.8:350940-351383:+ | gene-YNL147W_S288C | rna-NM_001182985.1_S288C | cds-NP_014252.2_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000018.1:62161-62604:- | gene-YNL147W_SA1 | rna-NM_001182985.1_SA1 | cds-NP_014252.2_SA1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005500.1:338416-338859:+ | gene-YNL147W_ThermosaccDry | rna-NM_001182985.1_ThermosaccDry | cds-NP_014252.2_ThermosaccDry | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005468.1:356961-357404:+ | gene-YNL147W_VR1 | rna-NM_001182985.1_VR1 | cds-NP_014252.2_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000030.1:248236-248680:+ | gene-YNL147W_ZTW1 | rna-NM_001182985.1_ZTW1 | cds-NP_014252.2_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047500.1:349190-349635:+ | gene-YNL147W_Sparadoxus | rna-NM_001182985.1_Sparadoxus | cds-NP_014252.2_Sparadoxus | 94.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |