Gene name: LSM6
Reference locus (S288C): YDR378C
Gene biotype: protein_coding
Description: U6 snRNA-associated Sm-like protein LSm6; Lsm (Like Sm) protein; part of heteroheptameric complexes (Lsm2p-7p and either Lsm1p or 8p): cytoplasmic Lsm1p complex involved in mRNA decay; nuclear Lsm8p complex part of U6 snRNP and possibly involved in processing tRNA, snoRNA, and rRNA; Belongs to the snRNP Sm proteins family. SmF/LSm6 subfamily
Top 10 interactors (score): PRP31 (0.999); PRP3 (0.999); PRP24 (0.999); LSM1 (0.999); PRP4 (0.999); LSM3 (0.999); LSM7 (0.999); PAT1 (0.999); LSM8 (0.999); SMX3 (0.999); SMX2 (0.999); SMD2 (0.999); SNU66 (0.999); SMD3 (0.999); SMB1 (0.999); LSM5 (0.999); SMD1 (0.999); CLF1 (0.999); LSM4 (0.999); SME1 (0.999)
Homologues (species, bitscore): LSM6 (Homo sapiens, 67.0); Lsm6 (Mus musculus, 67.0); lsm6 (Danio rerio, 66.6); lsm6 (Xenopus tropicalis, 67.0); CG9344 (Drosophila melanogaster, 61.2); lsm-6 (Caenorhabditis elegans, 64.7); LSM6B (Arabidopsis thaliana, 60.8)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005309.1:564742-565002:- | gene-YDR378C_AKU4011 | rna-NM_001180686.1_AKU4011 | cds-NP_010666.2_AKU4011 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000039.1:48041-48301:- | gene-YDR378C_BG1 | rna-NM_001180686.1_BG1 | cds-NP_010666.2_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:1200125-1200385:- | gene-YDR378C_Bruggeman | rna-NM_001180686.1_Bruggeman | cds-NP_010666.2_Bruggeman | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:1178733-1178993:- | gene-YDR378C_CAT1 | rna-NM_001180686.1_CAT1 | cds-NP_010666.2_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:1164234-1164494:- | gene-YDR378C_CBS1585 | rna-NM_001180686.1_CBS1585 | cds-NP_010666.2_CBS1585 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:1182788-1183048:- | gene-YDR378C_CBS436 | rna-NM_001180686.1_CBS436 | cds-NP_010666.2_CBS436 | 98.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:1160471-1160731:- | gene-YDR378C_CBS6412 | rna-NM_001180686.1_CBS6412 | cds-NP_010666.2_CBS6412 | 99.2 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:1182361-1182621:- | gene-YDR378C_CBS6413 | rna-NM_001180686.1_CBS6413 | cds-NP_010666.2_CBS6413 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:1228001-1228261:- | gene-YDR378C_CENPK1137D | rna-NM_001180686.1_CENPK1137D | cds-NP_010666.2_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:1173889-1174149:- | gene-YDR378C_EthanolRed | rna-NM_001180686.1_EthanolRed | cds-NP_010666.2_EthanolRed | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:1177176-1177436:- | gene-YDR378C_FaliES1 | rna-NM_001180686.1_FaliES1 | cds-NP_010666.2_FaliES1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000057.1:13643-13903:+ | gene-YDR378C_JAY291 | rna-NM_001180686.1_JAY291 | cds-NP_010666.2_JAY291 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:1183444-1183704:- | gene-YDR378C_MUCL30387 | rna-NM_001180686.1_MUCL30387 | cds-NP_010666.2_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:1166052-1166312:- | gene-YDR378C_MUCL30388 | rna-NM_001180686.1_MUCL30388 | cds-NP_010666.2_MUCL30388 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:1155785-1156045:- | gene-YDR378C_MUCL39482 | rna-NM_001180686.1_MUCL39482 | cds-NP_010666.2_MUCL39482 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:1098176-1098436:- | gene-YDR378C_MUCL42920 | rna-NM_001180686.1_MUCL42920 | cds-NP_010666.2_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:1229272-1229532:- | gene-YDR378C_NCIM3186 | rna-NM_001180686.1_NCIM3186 | cds-NP_010666.2_NCIM3186 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:1169756-1170016:- | gene-YDR378C_NCYC1407 | rna-NM_001180686.1_NCYC1407 | cds-NP_010666.2_NCYC1407 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:1179840-1180100:- | gene-YDR378C_PE2H3 | rna-NM_001180686.1_PE2H3 | cds-NP_010666.2_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:1185422-1185682:- | gene-YDR378C_PE2H4 | rna-NM_001180686.1_PE2H4 | cds-NP_010666.2_PE2H4 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:1229349-1229609:- | gene-YDR378C_S288C | rna-NM_001180686.1_S288C | cds-NP_010666.2_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000072.1:48122-48382:- | gene-YDR378C_SA1 | rna-NM_001180686.1_SA1 | cds-NP_010666.2_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:1181457-1181717:- | gene-YDR378C_ThermosaccDry | rna-NM_001180686.1_ThermosaccDry | cds-NP_010666.2_ThermosaccDry | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005469.1:608801-609061:- | gene-YDR378C_VR1 | rna-NM_001180686.1_VR1 | cds-NP_010666.2_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000008.1:224287-224547:- | gene-YDR378C_ZTW1 | rna-NM_001180686.1_ZTW1 | cds-NP_010666.2_ZTW1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:1176035-1176295:- | gene-YDR378C_Sparadoxus | rna-NM_001180686.1_Sparadoxus | cds-NP_010666.2_Sparadoxus | 89.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |