Gene name: LSM5
Reference locus (S288C): YER146W
Gene biotype: protein_coding
Description: U6 snRNA-associated Sm-like protein LSm5; Lsm (Like Sm) protein; part of heteroheptameric complexes (Lsm2p-7p and either Lsm1p or 8p): cytoplasmic Lsm1p complex involved in mRNA decay; nuclear Lsm8p complex part of U6 snRNP and possibly involved in processing tRNA, snoRNA, and rRNA
Top 10 interactors (score): SMX2 (0.999); PRP31 (0.999); PRP24 (0.999); LSM3 (0.999); PRP3 (0.999); LSM1 (0.999); PRP4 (0.999); SMD1 (0.999); LSM6 (0.999); SNU13 (0.999); LSM4 (0.999); PRP6 (0.999); SMD2 (0.999); SNU66 (0.999); SMD3 (0.999); SMB1 (0.999); BRR2 (0.999); LSM2 (0.999); LSM8 (0.999); SMX3 (0.999)
Homologues (species, bitscore): LSM5 (Homo sapiens, 80.1); Lsm5 (Mus musculus, 80.1); LSM5 (Danio rerio, 78.2); lsm5 (Xenopus tropicalis, 69.7); CG6610 (Drosophila melanogaster, 72.8); lsm-5 (Caenorhabditis elegans, 75.9); SAD1 (Arabidopsis thaliana, 68.2)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005299.1:450091-450372:+ | gene-YER146W_AKU4011 | rna-NM_001179036.1_AKU4011 | cds-NP_011073.1_AKU4011 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000176.1:94236-94517:- | gene-YER146W_BG1 | rna-NM_001179036.1_BG1 | cds-NP_011073.1_BG1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005507.1:461376-461657:+ | gene-YER146W_Bruggeman | rna-NM_001179036.1_Bruggeman | cds-NP_011073.1_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005523.1:449217-449498:+ | gene-YER146W_CAT1 | rna-NM_001179036.1_CAT1 | cds-NP_011073.1_CAT1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005363.1:449909-450190:+ | gene-YER146W_CBS1585 | rna-NM_001179036.1_CBS1585 | cds-NP_011073.1_CBS1585 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005347.1:453714-453995:+ | gene-YER146W_CBS436 | rna-NM_001179036.1_CBS436 | cds-NP_011073.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005331.1:448412-448693:+ | gene-YER146W_CBS6412 | rna-NM_001179036.1_CBS6412 | cds-NP_011073.1_CBS6412 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005315.1:455956-456237:+ | gene-YER146W_CBS6413 | rna-NM_001179036.1_CBS6413 | cds-NP_011073.1_CBS6413 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001526.1:460358-460639:+ | gene-YER146W_CENPK1137D | rna-NM_001179036.1_CENPK1137D | cds-NP_011073.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005475.1:456372-456653:+ | gene-YER146W_EthanolRed | rna-NM_001179036.1_EthanolRed | cds-NP_011073.1_EthanolRed | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005539.1:456958-457239:+ | gene-YER146W_FaliES1 | rna-NM_001179036.1_FaliES1 | cds-NP_011073.1_FaliES1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000111.1:29241-29522:- | gene-YER146W_JAY291 | rna-NM_001179036.1_JAY291 | cds-NP_011073.1_JAY291 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005411.1:450118-450399:+ | gene-YER146W_MUCL30387 | rna-NM_001179036.1_MUCL30387 | cds-NP_011073.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005443.1:453010-453291:+ | gene-YER146W_MUCL30388 | rna-NM_001179036.1_MUCL30388 | cds-NP_011073.1_MUCL30388 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005283.1:445861-446142:+ | gene-YER146W_MUCL39482 | rna-NM_001179036.1_MUCL39482 | cds-NP_011073.1_MUCL39482 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005427.1:457937-458218:+ | gene-YER146W_MUCL42920 | rna-NM_001179036.1_MUCL42920 | cds-NP_011073.1_MUCL42920 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011814.1:462584-462865:+ | gene-YER146W_NCIM3186 | rna-NM_001179036.1_NCIM3186 | cds-NP_011073.1_NCIM3186 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005267.1:455320-455601:+ | gene-YER146W_NCYC1407 | rna-NM_001179036.1_NCYC1407 | cds-NP_011073.1_NCYC1407 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994144.1:471015-471296:+ | gene-YER146W_PE2H3 | rna-NM_001179036.1_PE2H3 | cds-NP_011073.1_PE2H3 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999876.1:460956-461237:+ | gene-YER146W_PE2H4 | rna-NM_001179036.1_PE2H4 | cds-NP_011073.1_PE2H4 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001137.3:462585-462866:+ | gene-YER146W_S288C | rna-NM_001179036.1_S288C | cds-NP_011073.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000030.1:20485-20766:+ | gene-YER146W_SA1 | rna-NM_001179036.1_SA1 | cds-NP_011073.1_SA1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005491.1:457756-458037:+ | gene-YER146W_ThermosaccDry | rna-NM_001179036.1_ThermosaccDry | cds-NP_011073.1_ThermosaccDry | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005459.1:450879-451160:+ | gene-YER146W_VR1 | rna-NM_001179036.1_VR1 | cds-NP_011073.1_VR1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000010.1:12719-13000:+ | gene-YER146W_ZTW1 | rna-NM_001179036.1_ZTW1 | cds-NP_011073.1_ZTW1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047491.1:458581-458862:+ | gene-YER146W_Sparadoxus | rna-NM_001179036.1_Sparadoxus | cds-NP_011073.1_Sparadoxus | 90.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |