Gene name: LSM3
Reference locus (S288C): YLR438C-A
Gene biotype: protein_coding
Description: U6 snRNA-associated Sm-like protein LSm3; Lsm (Like Sm) protein; part of heteroheptameric complexes (Lsm2p-7p and either Lsm1p or 8p): cytoplasmic Lsm1p complex involved in mRNA decay; nuclear Lsm8p complex part of U6 snRNP and possibly involved in processing tRNA, snoRNA, and rRNA; protein increases in abundance and relocalizes from nucleus to cytoplasmic foci upon DNA replication stress
Top 10 interactors (score): SNU23 (0.999); SMX2 (0.999); SMX3 (0.999); SNU114 (0.999); LSM4 (0.999); PAT1 (0.999); SME1 (0.999); DIB1 (0.999); PRP31 (0.999); LSM7 (0.999); SMD2 (0.999); SNU66 (0.999); PRP24 (0.999); SMD3 (0.999); SMB1 (0.999); PRP3 (0.999); LSM5 (0.999); LSM1 (0.999); XRN1 (0.999); PRP4 (0.999)
Homologues (species, bitscore): LSM3 (Homo sapiens, 75.9); Lsm3 (Mus musculus, 75.9); lsm3 (Danio rerio, 75.5); lsm3 (Xenopus tropicalis, 75.9); LSm3 (Drosophila melanogaster, 77.8); lsm-3 (Caenorhabditis elegans, 80.5); LSM3B (Arabidopsis thaliana, 77.8)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005306.1:952171-952440:- | gene-YLR438C-A_AKU4011 | rna-NM_001184308.3_AKU4011 | cds-NP_013543.3_AKU4011 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000048.1:184628-184897:- | gene-YLR438C-A_BG1 | rna-NM_001184308.3_BG1 | cds-NP_013543.3_BG1 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005514.1:990476-990745:- | gene-YLR438C-A_Bruggeman | rna-NM_001184308.3_Bruggeman | cds-NP_013543.3_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005530.1:986486-986755:- | gene-YLR438C-A_CAT1 | rna-NM_001184308.3_CAT1 | cds-NP_013543.3_CAT1 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005370.1:987762-988031:- | gene-YLR438C-A_CBS1585 | rna-NM_001184308.3_CBS1585 | cds-NP_013543.3_CBS1585 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005354.1:977108-977377:- | gene-YLR438C-A_CBS436 | rna-NM_001184308.3_CBS436 | cds-NP_013543.3_CBS436 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005338.1:1023802-1024071:- | gene-YLR438C-A_CBS6412 | rna-NM_001184308.3_CBS6412 | cds-NP_013543.3_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005322.1:988550-988819:- | gene-YLR438C-A_CBS6413 | rna-NM_001184308.3_CBS6413 | cds-NP_013543.3_CBS6413 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001533.1:998526-998795:- | gene-YLR438C-A_CENPK1137D | rna-NM_001184308.3_CENPK1137D | cds-NP_013543.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005482.1:945193-945462:- | gene-YLR438C-A_EthanolRed | rna-NM_001184308.3_EthanolRed | cds-NP_013543.3_EthanolRed | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005546.1:980464-980733:- | gene-YLR438C-A_FaliES1 | rna-NM_001184308.3_FaliES1 | cds-NP_013543.3_FaliES1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000194.1:37956-38225:+ | gene-YLR438C-A_JAY291 | rna-NM_001184308.3_JAY291 | cds-NP_013543.3_JAY291 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005418.1:989336-989605:- | gene-YLR438C-A_MUCL30387 | rna-NM_001184308.3_MUCL30387 | cds-NP_013543.3_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005450.1:996693-996962:- | gene-YLR438C-A_MUCL30388 | rna-NM_001184308.3_MUCL30388 | cds-NP_013543.3_MUCL30388 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005290.1:988982-989251:- | gene-YLR438C-A_MUCL39482 | rna-NM_001184308.3_MUCL39482 | cds-NP_013543.3_MUCL39482 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005434.1:989484-989753:- | gene-YLR438C-A_MUCL42920 | rna-NM_001184308.3_MUCL42920 | cds-NP_013543.3_MUCL42920 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011821.1:1013883-1014152:- | gene-YLR438C-A_NCIM3186 | rna-NM_001184308.3_NCIM3186 | cds-NP_013543.3_NCIM3186 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005274.1:998416-998685:- | gene-YLR438C-A_NCYC1407 | rna-NM_001184308.3_NCYC1407 | cds-NP_013543.3_NCYC1407 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994151.1:984861-985130:- | gene-YLR438C-A_PE2H3 | rna-NM_001184308.3_PE2H3 | cds-NP_013543.3_PE2H3 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999883.1:984605-984874:- | gene-YLR438C-A_PE2H4 | rna-NM_001184308.3_PE2H4 | cds-NP_013543.3_PE2H4 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001144.5:1013909-1014178:- | gene-YLR438C-A_S288C | rna-NM_001184308.3_S288C | cds-NP_013543.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000007.1:45775-46044:+ | gene-YLR438C-A_SA1 | rna-NM_001184308.3_SA1 | cds-NP_013543.3_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005498.1:983543-983812:- | gene-YLR438C-A_ThermosaccDry | rna-NM_001184308.3_ThermosaccDry | cds-NP_013543.3_ThermosaccDry | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005466.1:989964-990233:- | gene-YLR438C-A_VR1 | rna-NM_001184308.3_VR1 | cds-NP_013543.3_VR1 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000025.1:313815-314084:- | gene-YLR438C-A_ZTW1 | rna-NM_001184308.3_ZTW1 | cds-NP_013543.3_ZTW1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047498.1:962907-963176:- | gene-YLR438C-A_Sparadoxus | rna-NM_001184308.3_Sparadoxus | cds-NP_013543.3_Sparadoxus | 90.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |