Gene name: LSM2
Reference locus (S288C): YBL026W
Gene biotype: protein_coding
Description: U6 snRNA-associated Sm-like protein LSm2; Lsm (Like Sm) protein; part of heteroheptameric complexes (Lsm2p-7p and either Lsm1p or 8p): cytoplasmic Lsm1p complex involved in mRNA decay; nuclear Lsm8p complex part of U6 snRNP and possibly involved in processing tRNA, snoRNA, and rRNA; relocalizes from nucleus to cytoplasmic foci upon DNA replication stress
Top 10 interactors (score): SMB1 (0.999); SMD3 (0.999); LSM5 (0.999); PRP8 (0.999); PRP6 (0.999); SMD2 (0.999); SNU66 (0.999); LSM6 (0.999); LSM3 (0.999); PRP24 (0.999); LSM1 (0.999); PRP4 (0.999); SMD1 (0.999); LSM4 (0.999); CLF1 (0.999); PRP3 (0.999); PAT1 (0.999); LSM7 (0.999); PRP31 (0.999); SME1 (0.999)
Homologues (species, bitscore): LSM2 (Homo sapiens, 128.3); Lsm2 (Mus musculus, 125.9); smx5 (Danio rerio, 127.1); lsm2 (Xenopus tropicalis, 127.5); CG10418 (Drosophila melanogaster, 126.3); gut-2 (Caenorhabditis elegans, 119.8); LSM2 (Arabidopsis thaliana, 125.6)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005296.1:164236-164651:+ | gene-YBL026W_AKU4011 | rna-NM_001178266.1_AKU4011 | cds-NP_009527.1_AKU4011 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000179.1:155061-155476:+ | gene-YBL026W_BG1 | rna-NM_001178266.1_BG1 | cds-NP_009527.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005504.1:164819-165234:+ | gene-YBL026W_Bruggeman | rna-NM_001178266.1_Bruggeman | cds-NP_009527.1_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005520.1:167432-167847:+ | gene-YBL026W_CAT1 | rna-NM_001178266.1_CAT1 | cds-NP_009527.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005360.1:156791-157206:+ | gene-YBL026W_CBS1585 | rna-NM_001178266.1_CBS1585 | cds-NP_009527.1_CBS1585 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005344.1:165239-165654:+ | gene-YBL026W_CBS436 | rna-NM_001178266.1_CBS436 | cds-NP_009527.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005328.1:255570-255985:+ | gene-YBL026W_CBS6412 | rna-NM_001178266.1_CBS6412 | cds-NP_009527.1_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005312.1:162361-162776:+ | gene-YBL026W_CBS6413 | rna-NM_001178266.1_CBS6413 | cds-NP_009527.1_CBS6413 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001523.1:164389-164804:+ | gene-YBL026W_CENPK1137D | rna-NM_001178266.1_CENPK1137D | cds-NP_009527.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005472.1:291777-292192:+ | gene-YBL026W_EthanolRed | rna-NM_001178266.1_EthanolRed | cds-NP_009527.1_EthanolRed | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005536.1:179043-179458:+ | gene-YBL026W_FaliES1 | rna-NM_001178266.1_FaliES1 | cds-NP_009527.1_FaliES1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000421.1:4713-5128:+ | gene-YBL026W_JAY291 | rna-NM_001178266.1_JAY291 | cds-NP_009527.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005408.1:164428-164843:+ | gene-YBL026W_MUCL30387 | rna-NM_001178266.1_MUCL30387 | cds-NP_009527.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005440.1:165719-166134:+ | gene-YBL026W_MUCL30388 | rna-NM_001178266.1_MUCL30388 | cds-NP_009527.1_MUCL30388 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005280.1:156976-157391:+ | gene-YBL026W_MUCL39482 | rna-NM_001178266.1_MUCL39482 | cds-NP_009527.1_MUCL39482 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005424.1:164000-164415:+ | gene-YBL026W_MUCL42920 | rna-NM_001178266.1_MUCL42920 | cds-NP_009527.1_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011811.1:170420-170835:+ | gene-YBL026W_NCIM3186 | rna-NM_001178266.1_NCIM3186 | cds-NP_009527.1_NCIM3186 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005264.1:158125-158540:+ | gene-YBL026W_NCYC1407 | rna-NM_001178266.1_NCYC1407 | cds-NP_009527.1_NCYC1407 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994141.1:164349-164764:+ | gene-YBL026W_PE2H3 | rna-NM_001178266.1_PE2H3 | cds-NP_009527.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999873.1:161993-162408:+ | gene-YBL026W_PE2H4 | rna-NM_001178266.1_PE2H4 | cds-NP_009527.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001134.8:170623-171038:+ | gene-YBL026W_S288C | rna-NM_001178266.1_S288C | cds-NP_009527.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000051.1:55286-55701:+ | gene-YBL026W_SA1 | rna-NM_001178266.1_SA1 | cds-NP_009527.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005488.1:178998-179413:+ | gene-YBL026W_ThermosaccDry | rna-NM_001178266.1_ThermosaccDry | cds-NP_009527.1_ThermosaccDry | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005456.1:161163-161578:+ | gene-YBL026W_VR1 | rna-NM_001178266.1_VR1 | cds-NP_009527.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000003.1:155713-156128:+ | gene-YBL026W_ZTW1 | rna-NM_001178266.1_ZTW1 | cds-NP_009527.1_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047488.1:190686-191104:+ | gene-YBL026W_Sparadoxus | rna-NM_001178266.1_Sparadoxus | cds-NP_009527.1_Sparadoxus | 94.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |