Gene name: LSM12
Reference locus (S288C): YHR121W
Gene biotype: protein_coding
Description: Protein of unknown function that may function in RNA processing; interacts with Pbp1p and Pbp4p and associates with ribosomes; contains an RNA-binding LSM domain and an AD domain; GFP-fusion protein is induced by the DNA-damaging agent MMS; relative distribution to the nucleus increases upon DNA replication stress; Belongs to the LSM12 family
Top 10 interactors (score): PBP1 (0.999); DHH1 (0.986); PBP4 (0.979); LSM1 (0.899); PAB1 (0.898); SMB1 (0.888); LSM3 (0.877); LSM7 (0.875); LSM6 (0.859); MKT1 (0.856); LSM2 (0.851); EDC3 (0.815); LSM8 (0.788); PUF3 (0.785); SMD1 (0.746); LSM4 (0.692); LSM5 (0.691); HSP42 (0.655); SMD2 (0.653); DIG1 (0.645)
Homologues (species, bitscore): LSM12 (Homo sapiens, 70.5); Lsm12 (Mus musculus, 70.5); lsm12b (Danio rerio, 74.3); lsm12 (Xenopus tropicalis, 59.3)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005302.1:339682-340245:+ | gene-YHR121W_AKU4011 | rna-NM_001179251.1_AKU4011 | cds-NP_011989.1_AKU4011 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000141.1:177627-178190:- | gene-YHR121W_BG1 | rna-NM_001179251.1_BG1 | cds-NP_011989.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005510.1:346973-347536:+ | gene-YHR121W_Bruggeman | rna-NM_001179251.1_Bruggeman | cds-NP_011989.1_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005526.1:342110-342673:+ | gene-YHR121W_CAT1 | rna-NM_001179251.1_CAT1 | cds-NP_011989.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005366.1:338706-339269:+ | gene-YHR121W_CBS1585 | rna-NM_001179251.1_CBS1585 | cds-NP_011989.1_CBS1585 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005350.1:336065-336628:+ | gene-YHR121W_CBS436 | rna-NM_001179251.1_CBS436 | cds-NP_011989.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005334.1:340144-340707:+ | gene-YHR121W_CBS6412 | rna-NM_001179251.1_CBS6412 | cds-NP_011989.1_CBS6412 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005318.1:339733-340296:+ | gene-YHR121W_CBS6413 | rna-NM_001179251.1_CBS6413 | cds-NP_011989.1_CBS6413 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001529.1:345930-346493:+ | gene-YHR121W_CENPK1137D | rna-NM_001179251.1_CENPK1137D | cds-NP_011989.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005478.1:398587-399150:+ | gene-YHR121W_EthanolRed | rna-NM_001179251.1_EthanolRed | cds-NP_011989.1_EthanolRed | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005542.1:340075-340638:+ | gene-YHR121W_FaliES1 | rna-NM_001179251.1_FaliES1 | cds-NP_011989.1_FaliES1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000139.1:12691-13254:+ | gene-YHR121W_JAY291 | rna-NM_001179251.1_JAY291 | cds-NP_011989.1_JAY291 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005414.1:346703-347266:+ | gene-YHR121W_MUCL30387 | rna-NM_001179251.1_MUCL30387 | cds-NP_011989.1_MUCL30387 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005446.1:346350-346913:+ | gene-YHR121W_MUCL30388 | rna-NM_001179251.1_MUCL30388 | cds-NP_011989.1_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005286.1:339045-339608:+ | gene-YHR121W_MUCL39482 | rna-NM_001179251.1_MUCL39482 | cds-NP_011989.1_MUCL39482 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005430.1:345285-345848:+ | gene-YHR121W_MUCL42920 | rna-NM_001179251.1_MUCL42920 | cds-NP_011989.1_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011817.1:352638-353201:+ | gene-YHR121W_NCIM3186 | rna-NM_001179251.1_NCIM3186 | cds-NP_011989.1_NCIM3186 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005270.1:341255-341818:+ | gene-YHR121W_NCYC1407 | rna-NM_001179251.1_NCYC1407 | cds-NP_011989.1_NCYC1407 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994147.1:340707-341270:+ | gene-YHR121W_PE2H3 | rna-NM_001179251.1_PE2H3 | cds-NP_011989.1_PE2H3 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999879.1:348134-348697:+ | gene-YHR121W_PE2H4 | rna-NM_001179251.1_PE2H4 | cds-NP_011989.1_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001140.6:352756-353319:+ | gene-YHR121W_S288C | rna-NM_001179251.1_S288C | cds-NP_011989.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000014.1:5651-6214:- | gene-YHR121W_SA1 | rna-NM_001179251.1_SA1 | cds-NP_011989.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005494.1:341158-341721:+ | gene-YHR121W_ThermosaccDry | rna-NM_001179251.1_ThermosaccDry | cds-NP_011989.1_ThermosaccDry | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005462.1:348779-349342:+ | gene-YHR121W_VR1 | rna-NM_001179251.1_VR1 | cds-NP_011989.1_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000017.1:332169-332732:+ | gene-YHR121W_ZTW1 | rna-NM_001179251.1_ZTW1 | cds-NP_011989.1_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047494.1:337841-338404:+ | gene-YHR121W_Sparadoxus | rna-NM_001179251.1_Sparadoxus | cds-NP_011989.1_Sparadoxus | 93.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |