Gene name: LSG1
Reference locus (S288C): YGL099W
Gene biotype: protein_coding
Description: Large subunit GTPase 1; Putative GTPase involved in 60S ribosomal subunit biogenesis; required for the release of Nmd3p from 60S subunits in the cytoplasm; Belongs to the TRAFAC class YlqF/YawG GTPase family. LSG1 subfamily
Top 10 interactors (score): REI1 (0.999); ARX1 (0.999); TIF6 (0.999); NMD3 (0.999); SDA1 (0.999); NOG1 (0.998); YVH1 (0.998); RLP24 (0.996); RPL3 (0.996); RPL5 (0.995); KRE33 (0.993); NOP7 (0.991); PWP1 (0.991); NUG1 (0.991); RPL10 (0.991); RRP12 (0.99); NOP4 (0.99); REH1 (0.99); ERB1 (0.988); MRT4 (0.988)
Homologues (species, bitscore): LSG1 (Homo sapiens, 378.6); Lsg1 (Mus musculus, 375.9); lsg1 (Danio rerio, 382.1); lsg1 (Xenopus tropicalis, 389.4); Ns3 (Drosophila melanogaster, 375.2); C53H9.2 (Caenorhabditis elegans, 336.3); AT2G27200 (Arabidopsis thaliana, 348.2)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005301.1:317947-319869:+ | gene-YGL099W_AKU4011 | rna-NM_001180964.3_AKU4011 | cds-NP_011416.3_AKU4011 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000132.1:85847-87769:- | gene-YGL099W_BG1 | rna-NM_001180964.3_BG1 | cds-NP_011416.3_BG1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005509.1:320101-322023:+ | gene-YGL099W_Bruggeman | rna-NM_001180964.3_Bruggeman | cds-NP_011416.3_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005525.1:315638-317560:+ | gene-YGL099W_CAT1 | rna-NM_001180964.3_CAT1 | cds-NP_011416.3_CAT1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005365.1:321271-323193:+ | gene-YGL099W_CBS1585 | rna-NM_001180964.3_CBS1585 | cds-NP_011416.3_CBS1585 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005349.1:315568-317490:+ | gene-YGL099W_CBS436 | rna-NM_001180964.3_CBS436 | cds-NP_011416.3_CBS436 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005333.1:305964-307886:+ | gene-YGL099W_CBS6412 | rna-NM_001180964.3_CBS6412 | cds-NP_011416.3_CBS6412 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005317.1:315569-317491:+ | gene-YGL099W_CBS6413 | rna-NM_001180964.3_CBS6413 | cds-NP_011416.3_CBS6413 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001528.1:314812-316734:+ | gene-YGL099W_CENPK1137D | rna-NM_001180964.3_CENPK1137D | cds-NP_011416.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005477.1:307018-308940:+ | gene-YGL099W_EthanolRed | rna-NM_001180964.3_EthanolRed | cds-NP_011416.3_EthanolRed | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005541.1:309573-311495:+ | gene-YGL099W_FaliES1 | rna-NM_001180964.3_FaliES1 | cds-NP_011416.3_FaliES1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000046.1:35323-37245:- | gene-YGL099W_JAY291 | rna-NM_001180964.3_JAY291 | cds-NP_011416.3_JAY291 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005413.1:317071-318993:+ | gene-YGL099W_MUCL30387 | rna-NM_001180964.3_MUCL30387 | cds-NP_011416.3_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005445.1:320155-322077:+ | gene-YGL099W_MUCL30388 | rna-NM_001180964.3_MUCL30388 | cds-NP_011416.3_MUCL30388 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005285.1:317784-319706:+ | gene-YGL099W_MUCL39482 | rna-NM_001180964.3_MUCL39482 | cds-NP_011416.3_MUCL39482 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005429.1:321734-323656:+ | gene-YGL099W_MUCL42920 | rna-NM_001180964.3_MUCL42920 | cds-NP_011416.3_MUCL42920 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011816.1:314631-316553:+ | gene-YGL099W_NCIM3186 | rna-NM_001180964.3_NCIM3186 | cds-NP_011416.3_NCIM3186 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005269.1:309274-311196:+ | gene-YGL099W_NCYC1407 | rna-NM_001180964.3_NCYC1407 | cds-NP_011416.3_NCYC1407 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994146.1:310673-312595:+ | gene-YGL099W_PE2H3 | rna-NM_001180964.3_PE2H3 | cds-NP_011416.3_PE2H3 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999878.1:315671-317593:+ | gene-YGL099W_PE2H4 | rna-NM_001180964.3_PE2H4 | cds-NP_011416.3_PE2H4 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001139.9:314631-316553:+ | gene-YGL099W_S288C | rna-NM_001180964.3_S288C | cds-NP_011416.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000064.1:59416-61338:+ | gene-YGL099W_SA1 | rna-NM_001180964.3_SA1 | cds-NP_011416.3_SA1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005493.1:309785-311707:+ | gene-YGL099W_ThermosaccDry | rna-NM_001180964.3_ThermosaccDry | cds-NP_011416.3_ThermosaccDry | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005461.1:419389-421311:+ | gene-YGL099W_VR1 | rna-NM_001180964.3_VR1 | cds-NP_011416.3_VR1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000014.1:307183-309105:+ | gene-YGL099W_ZTW1 | rna-NM_001180964.3_ZTW1 | cds-NP_011416.3_ZTW1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047493.1:313561-315495:+ | gene-YGL099W_Sparadoxus | rna-NM_001180964.3_Sparadoxus | cds-NP_011416.3_Sparadoxus | 91.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |