Gene name: LSC2
Reference locus (S288C): YGR244C
Gene biotype: protein_coding
Description: Succinate--coa ligase [adp-forming] subunit beta, mitochondrial; Beta subunit of succinyl-CoA ligase; succinyl-CoA ligase is a mitochondrial enzyme of the TCA cycle that catalyzes the nucleotide-dependent conversion of succinyl-CoA to succinate
Top 10 interactors (score): LSC1 (0.999); KGD2 (0.999); KGD1 (0.998); IDH2 (0.998); LPD1 (0.997); LYS12 (0.991); PDB1 (0.98); SDH1 (0.978); LAT1 (0.965); FUM1 (0.961); SDH3 (0.957); YJL045W (0.955); SDH2 (0.954); ATP3 (0.952); ACO1 (0.948); ACH1 (0.946); IRC15 (0.945); CYT1 (0.945); RIP1 (0.933); ACS1 (0.92)
Homologues (species, bitscore): SUCLA2 (Homo sapiens, 407.5); Sucla2 (Mus musculus, 411.0); sucla2 (Danio rerio, 417.5); sucla2 (Xenopus tropicalis, 421.0); skap (Drosophila melanogaster, 384.4); suca-1 (Caenorhabditis elegans, 388.3); AT2G20420 (Arabidopsis thaliana, 379.0)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005301.1:943450-944733:- | gene-YGR244C_AKU4011 | rna-NM_001181373.3_AKU4011 | cds-NP_011760.3_AKU4011 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000021.1:223545-224828:- | gene-YGR244C_BG1 | rna-NM_001181373.3_BG1 | cds-NP_011760.3_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005509.1:951042-952325:- | gene-YGR244C_Bruggeman | rna-NM_001181373.3_Bruggeman | cds-NP_011760.3_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005525.1:950557-951840:- | gene-YGR244C_CAT1 | rna-NM_001181373.3_CAT1 | cds-NP_011760.3_CAT1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005365.1:946307-947590:- | gene-YGR244C_CBS1585 | rna-NM_001181373.3_CBS1585 | cds-NP_011760.3_CBS1585 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005349.1:949958-951241:- | gene-YGR244C_CBS436 | rna-NM_001181373.3_CBS436 | cds-NP_011760.3_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005333.1:937190-938473:- | gene-YGR244C_CBS6412 | rna-NM_001181373.3_CBS6412 | cds-NP_011760.3_CBS6412 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005317.1:943241-944524:- | gene-YGR244C_CBS6413 | rna-NM_001181373.3_CBS6413 | cds-NP_011760.3_CBS6413 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001528.1:977717-979000:- | gene-YGR244C_CENPK1137D | rna-NM_001181373.3_CENPK1137D | cds-NP_011760.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005477.1:931280-932563:- | gene-YGR244C_EthanolRed | rna-NM_001181373.3_EthanolRed | cds-NP_011760.3_EthanolRed | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005541.1:936086-937369:- | gene-YGR244C_FaliES1 | rna-NM_001181373.3_FaliES1 | cds-NP_011760.3_FaliES1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000076.1:92923-94206:+ | gene-YGR244C_JAY291 | rna-NM_001181373.3_JAY291 | cds-NP_011760.3_JAY291 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005413.1:948958-950241:- | gene-YGR244C_MUCL30387 | rna-NM_001181373.3_MUCL30387 | cds-NP_011760.3_MUCL30387 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005445.1:948223-949506:- | gene-YGR244C_MUCL30388 | rna-NM_001181373.3_MUCL30388 | cds-NP_011760.3_MUCL30388 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005285.1:941430-942713:- | gene-YGR244C_MUCL39482 | rna-NM_001181373.3_MUCL39482 | cds-NP_011760.3_MUCL39482 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005429.1:959936-961219:- | gene-YGR244C_MUCL42920 | rna-NM_001181373.3_MUCL42920 | cds-NP_011760.3_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011816.1:978036-979319:- | gene-YGR244C_NCIM3186 | rna-NM_001181373.3_NCIM3186 | cds-NP_011760.3_NCIM3186 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005269.1:937050-938333:- | gene-YGR244C_NCYC1407 | rna-NM_001181373.3_NCYC1407 | cds-NP_011760.3_NCYC1407 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994146.1:962228-963511:- | gene-YGR244C_PE2H3 | rna-NM_001181373.3_PE2H3 | cds-NP_011760.3_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999878.1:967067-968350:- | gene-YGR244C_PE2H4 | rna-NM_001181373.3_PE2H4 | cds-NP_011760.3_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001139.9:978036-979319:- | gene-YGR244C_S288C | rna-NM_001181373.3_S288C | cds-NP_011760.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000045.1:22178-23461:+ | gene-YGR244C_SA1 | rna-NM_001181373.3_SA1 | cds-NP_011760.3_SA1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005493.1:956613-957896:- | gene-YGR244C_ThermosaccDry | rna-NM_001181373.3_ThermosaccDry | cds-NP_011760.3_ThermosaccDry | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005461.1:1061874-1063157:- | gene-YGR244C_VR1 | rna-NM_001181373.3_VR1 | cds-NP_011760.3_VR1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000016.1:258021-259304:- | gene-YGR244C_ZTW1 | rna-NM_001181373.3_ZTW1 | cds-NP_011760.3_ZTW1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047493.1:948842-950125:- | gene-YGR244C_Sparadoxus | rna-NM_001181373.3_Sparadoxus | cds-NP_011760.3_Sparadoxus | 92.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |