Gene name: LSB5
Reference locus (S288C): YCL034W
Gene biotype: protein_coding
Description: Protein involved in membrane-trafficking events at plasma membrane; interacts with actin regulators Sla1p and Las17p, ubiquitin, Arf3p to couple actin dynamics to membrane trafficking processes; similar structure to GGA family of proteins with N-terminal VHS domain and GAT domain; binds Las17p, which is homolog of human Wiskott-Aldrich Syndrome protein involved in actin patch assembly, actin polymerization; may mediate disassembly of Pan1 complex from endocytic coat; Belongs to the LSB5 family
Top 10 interactors (score): ARF3 (0.958); SLA1 (0.944); YSC84 (0.896); ARL1 (0.882); LAS17 (0.856); GTS1 (0.767); YEL1 (0.748); PRK1 (0.712); PAN1 (0.675); ABP1 (0.672); ARK1 (0.656); SWA2 (0.619); INP52 (0.618); SLA2 (0.618); SYT1 (0.611); AIM3 (0.593); ACT1 (0.566); MXR2 (0.537); LSB1 (0.529); SCP1 (0.454)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005297.1:63020-64084:+ | gene-YCL034W_AKU4011 | rna-NM_001178679.1_AKU4011 | cds-NP_009896.2_AKU4011 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000178.1:83029-84093:- | gene-YCL034W_BG1 | rna-NM_001178679.1_BG1 | cds-NP_009896.2_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005505.1:51211-52275:+ | gene-YCL034W_Bruggeman | rna-NM_001178679.1_Bruggeman | cds-NP_009896.2_Bruggeman | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005521.1:62816-63880:+ | gene-YCL034W_CAT1 | rna-NM_001178679.1_CAT1 | cds-NP_009896.2_CAT1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005361.1:63707-64771:+ | gene-YCL034W_CBS1585 | rna-NM_001178679.1_CBS1585 | cds-NP_009896.2_CBS1585 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005345.1:62154-63218:+ | gene-YCL034W_CBS436 | rna-NM_001178679.1_CBS436 | cds-NP_009896.2_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005329.1:51109-52173:+ | gene-YCL034W_CBS6412 | rna-NM_001178679.1_CBS6412 | cds-NP_009896.2_CBS6412 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005313.1:62481-63545:+ | gene-YCL034W_CBS6413 | rna-NM_001178679.1_CBS6413 | cds-NP_009896.2_CBS6413 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001524.1:61255-62319:+ | gene-YCL034W_CENPK1137D | rna-NM_001178679.1_CENPK1137D | cds-NP_009896.2_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005473.1:61043-62107:+ | gene-YCL034W_EthanolRed | rna-NM_001178679.1_EthanolRed | cds-NP_009896.2_EthanolRed | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005537.1:61983-63047:+ | gene-YCL034W_FaliES1 | rna-NM_001178679.1_FaliES1 | cds-NP_009896.2_FaliES1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000225.1:21336-22400:- | gene-YCL034W_JAY291 | rna-NM_001178679.1_JAY291 | cds-NP_009896.2_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005409.1:49407-50471:+ | gene-YCL034W_MUCL30387 | rna-NM_001178679.1_MUCL30387 | cds-NP_009896.2_MUCL30387 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005441.1:49680-50744:+ | gene-YCL034W_MUCL30388 | rna-NM_001178679.1_MUCL30388 | cds-NP_009896.2_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005281.1:64076-65140:+ | gene-YCL034W_MUCL39482 | rna-NM_001178679.1_MUCL39482 | cds-NP_009896.2_MUCL39482 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005425.1:50192-51256:+ | gene-YCL034W_MUCL42920 | rna-NM_001178679.1_MUCL42920 | cds-NP_009896.2_MUCL42920 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011812.1:61290-62354:+ | gene-YCL034W_NCIM3186 | rna-NM_001178679.1_NCIM3186 | cds-NP_009896.2_NCIM3186 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005265.1:64564-65628:+ | gene-YCL034W_NCYC1407 | rna-NM_001178679.1_NCYC1407 | cds-NP_009896.2_NCYC1407 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994142.1:62111-63175:+ | gene-YCL034W_PE2H3 | rna-NM_001178679.1_PE2H3 | cds-NP_009896.2_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999874.1:62068-63132:+ | gene-YCL034W_PE2H4 | rna-NM_001178679.1_PE2H4 | cds-NP_009896.2_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001135.5:61658-62722:+ | gene-YCL034W_S288C | rna-NM_001178679.1_S288C | cds-NP_009896.2_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000061.1:48796-49860:+ | gene-YCL034W_SA1 | rna-NM_001178679.1_SA1 | cds-NP_009896.2_SA1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005489.1:62304-63368:+ | gene-YCL034W_ThermosaccDry | rna-NM_001178679.1_ThermosaccDry | cds-NP_009896.2_ThermosaccDry | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005457.1:68600-69664:+ | gene-YCL034W_VR1 | rna-NM_001178679.1_VR1 | cds-NP_009896.2_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000004.1:62504-63568:+ | gene-YCL034W_ZTW1 | rna-NM_001178679.1_ZTW1 | cds-NP_009896.2_ZTW1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047489.1:92052-93116:+ | gene-YCL034W_Sparadoxus | rna-NM_001178679.1_Sparadoxus | cds-NP_009896.2_Sparadoxus | 91.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |