Gene name: LRS4
Reference locus (S288C): YDR439W
Gene biotype: protein_coding
Description: Monopolin complex subunit LRS4; Nucleolar protein that forms a complex with Csm1p; and then Mam1p at kinetochores during meiosis I to mediate accurate homolog segregation; required for condensin recruitment to the replication fork barrier site and rDNA repeat segregation
Top 10 interactors (score): CSM1 (0.999); HRR25 (0.993); MAM1 (0.991); SRC1 (0.984); NUR1 (0.977); TOF2 (0.975); CDC14 (0.937); NET1 (0.887); FOB1 (0.884); SIR2 (0.823); BRN1 (0.75); SIR4 (0.723); HEH2 (0.685); ESC1 (0.679); SMC2 (0.635); SPO13 (0.617); CDC5 (0.608); ULP2 (0.597); CDC7 (0.571); DSF1 (0.571)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:1279948-1280991:+ | gene-YDR439W_AKU4011 | rna-NM_001180747.1_AKU4011 | cds-NP_010727.1_AKU4011 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000039.1:158285-159328:+ | gene-YDR439W_BG1 | rna-NM_001180747.1_BG1 | cds-NP_010727.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:1310331-1311374:+ | gene-YDR439W_Bruggeman | rna-NM_001180747.1_Bruggeman | cds-NP_010727.1_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:1288522-1289565:+ | gene-YDR439W_CAT1 | rna-NM_001180747.1_CAT1 | cds-NP_010727.1_CAT1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:1274255-1275298:+ | gene-YDR439W_CBS1585 | rna-NM_001180747.1_CBS1585 | cds-NP_010727.1_CBS1585 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:1293606-1294649:+ | gene-YDR439W_CBS436 | rna-NM_001180747.1_CBS436 | cds-NP_010727.1_CBS436 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:1269893-1270936:+ | gene-YDR439W_CBS6412 | rna-NM_001180747.1_CBS6412 | cds-NP_010727.1_CBS6412 | 99.1 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:1292407-1293450:+ | gene-YDR439W_CBS6413 | rna-NM_001180747.1_CBS6413 | cds-NP_010727.1_CBS6413 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:1338354-1339397:+ | gene-YDR439W_CENPK1137D | rna-NM_001180747.1_CENPK1137D | cds-NP_010727.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:1283318-1284361:+ | gene-YDR439W_EthanolRed | rna-NM_001180747.1_EthanolRed | cds-NP_010727.1_EthanolRed | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:1286869-1287912:+ | gene-YDR439W_FaliES1 | rna-NM_001180747.1_FaliES1 | cds-NP_010727.1_FaliES1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000263.1:31089-32132:+ | gene-YDR439W_JAY291 | rna-NM_001180747.1_JAY291 | cds-NP_010727.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:1293974-1295017:+ | gene-YDR439W_MUCL30387 | rna-NM_001180747.1_MUCL30387 | cds-NP_010727.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:1275907-1276950:+ | gene-YDR439W_MUCL30388 | rna-NM_001180747.1_MUCL30388 | cds-NP_010727.1_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:1265746-1266789:+ | gene-YDR439W_MUCL39482 | rna-NM_001180747.1_MUCL39482 | cds-NP_010727.1_MUCL39482 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:1208166-1209209:+ | gene-YDR439W_MUCL42920 | rna-NM_001180747.1_MUCL42920 | cds-NP_010727.1_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:1339599-1340642:+ | gene-YDR439W_NCIM3186 | rna-NM_001180747.1_NCIM3186 | cds-NP_010727.1_NCIM3186 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:1279511-1280554:+ | gene-YDR439W_NCYC1407 | rna-NM_001180747.1_NCYC1407 | cds-NP_010727.1_NCYC1407 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:1290332-1291375:+ | gene-YDR439W_PE2H3 | rna-NM_001180747.1_PE2H3 | cds-NP_010727.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:1295900-1296943:+ | gene-YDR439W_PE2H4 | rna-NM_001180747.1_PE2H4 | cds-NP_010727.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:1339676-1340719:+ | gene-YDR439W_S288C | rna-NM_001180747.1_S288C | cds-NP_010727.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000082.1:16497-17540:- | gene-YDR439W_SA1 | rna-NM_001180747.1_SA1 | cds-NP_010727.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:1291093-1292136:+ | gene-YDR439W_ThermosaccDry | rna-NM_001180747.1_ThermosaccDry | cds-NP_010727.1_ThermosaccDry | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:1306313-1307356:+ | gene-YDR439W_VR1 | rna-NM_001180747.1_VR1 | cds-NP_010727.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000008.1:333729-334772:+ | gene-YDR439W_ZTW1 | rna-NM_001180747.1_ZTW1 | cds-NP_010727.1_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:1287475-1288518:+ | gene-YDR439W_Sparadoxus | rna-NM_001180747.1_Sparadoxus | cds-NP_010727.1_Sparadoxus | 86.0 | 99.4 | Verified | 1 | 1 | 1 | False | True | False | False | False |