Gene name: LRP1
Reference locus (S288C): YHR081W
Gene biotype: protein_coding
Description: Nuclear exosome-associated nucleic acid binding protein; involved in RNA processing, surveillance, degradation, tethering, and export; forms a stable heterodimer with Rrp6p and regulates its exonucleolytic activity; rapidly degraded by the proteasome in the absence of Rrp6p; homolog of mammalian nuclear matrix protein C1D involved in regulation of DNA repair and recombination
Top 10 interactors (score): RRP45 (0.999); MTR4 (0.999); DIS3 (0.999); RRP6 (0.999); RRP43 (0.999); CSL4 (0.999); RRP40 (0.999); RRP4 (0.999); RRP46 (0.999); MPP6 (0.999); RRP42 (0.998); MTR3 (0.997); SKI6 (0.995); SAS10 (0.99); IMP4 (0.94); UTP18 (0.936); UTP6 (0.907); RRT14 (0.906); NOP56 (0.895); RNH70 (0.892)
Homologues (species, bitscore): c1d (Danio rerio, 52.0)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005302.1:253949-254503:+ | gene-YHR081W_AKU4011 | rna-NM_001179211.1_AKU4011 | cds-NP_011949.1_AKU4011 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000053.1:174296-174850:+ | gene-YHR081W_BG1 | rna-NM_001179211.1_BG1 | cds-NP_011949.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005510.1:261776-262330:+ | gene-YHR081W_Bruggeman | rna-NM_001179211.1_Bruggeman | cds-NP_011949.1_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005526.1:256919-257473:+ | gene-YHR081W_CAT1 | rna-NM_001179211.1_CAT1 | cds-NP_011949.1_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005366.1:252991-253545:+ | gene-YHR081W_CBS1585 | rna-NM_001179211.1_CBS1585 | cds-NP_011949.1_CBS1585 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005350.1:250852-251406:+ | gene-YHR081W_CBS436 | rna-NM_001179211.1_CBS436 | cds-NP_011949.1_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005334.1:256338-256892:+ | gene-YHR081W_CBS6412 | rna-NM_001179211.1_CBS6412 | cds-NP_011949.1_CBS6412 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005318.1:254030-254584:+ | gene-YHR081W_CBS6413 | rna-NM_001179211.1_CBS6413 | cds-NP_011949.1_CBS6413 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001529.1:260709-261263:+ | gene-YHR081W_CENPK1137D | rna-NM_001179211.1_CENPK1137D | cds-NP_011949.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005478.1:313556-314110:+ | gene-YHR081W_EthanolRed | rna-NM_001179211.1_EthanolRed | cds-NP_011949.1_EthanolRed | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005542.1:254360-254914:+ | gene-YHR081W_FaliES1 | rna-NM_001179211.1_FaliES1 | cds-NP_011949.1_FaliES1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000394.1:37085-37639:+ | gene-YHR081W_JAY291 | rna-NM_001179211.1_JAY291 | cds-NP_011949.1_JAY291 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005414.1:261296-261850:+ | gene-YHR081W_MUCL30387 | rna-NM_001179211.1_MUCL30387 | cds-NP_011949.1_MUCL30387 | 99.6 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | False | True |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005446.1:261160-261714:+ | gene-YHR081W_MUCL30388 | rna-NM_001179211.1_MUCL30388 | cds-NP_011949.1_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005286.1:253314-253868:+ | gene-YHR081W_MUCL39482 | rna-NM_001179211.1_MUCL39482 | cds-NP_011949.1_MUCL39482 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005430.1:260059-260613:+ | gene-YHR081W_MUCL42920 | rna-NM_001179211.1_MUCL42920 | cds-NP_011949.1_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011817.1:267420-267974:+ | gene-YHR081W_NCIM3186 | rna-NM_001179211.1_NCIM3186 | cds-NP_011949.1_NCIM3186 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005270.1:255778-256332:+ | gene-YHR081W_NCYC1407 | rna-NM_001179211.1_NCYC1407 | cds-NP_011949.1_NCYC1407 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994147.1:255449-256003:+ | gene-YHR081W_PE2H3 | rna-NM_001179211.1_PE2H3 | cds-NP_011949.1_PE2H3 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999879.1:262896-263450:+ | gene-YHR081W_PE2H4 | rna-NM_001179211.1_PE2H4 | cds-NP_011949.1_PE2H4 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001140.6:267538-268092:+ | gene-YHR081W_S288C | rna-NM_001179211.1_S288C | cds-NP_011949.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000014.1:90896-91450:- | gene-YHR081W_SA1 | rna-NM_001179211.1_SA1 | cds-NP_011949.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005494.1:255451-256005:+ | gene-YHR081W_ThermosaccDry | rna-NM_001179211.1_ThermosaccDry | cds-NP_011949.1_ThermosaccDry | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005462.1:263324-263878:+ | gene-YHR081W_VR1 | rna-NM_001179211.1_VR1 | cds-NP_011949.1_VR1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000017.1:247004-247558:+ | gene-YHR081W_ZTW1 | rna-NM_001179211.1_ZTW1 | cds-NP_011949.1_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047494.1:252771-253328:+ | gene-YHR081W_Sparadoxus | rna-NM_001179211.1_Sparadoxus | cds-NP_011949.1_Sparadoxus | 86.4 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |