Gene name: LRE1
Reference locus (S288C): YCL051W
Gene biotype: protein_coding
Description: Laminarase-resistance protein LRE1; Protein involved in control of cell wall structure and stress response; direct inhibitor of the nuclear Dbf2 related (NDR) kinase Cbk1p-Mob2p; overproduction confers resistance to cell-wall degrading enzymes; exhibits genetic interactions with genes involved in the cell wall integrity pathway; LRE1 has a paralog, HLR1, that arose from the whole genome duplication
Top 10 interactors (score): CBK1 (0.918); L9354.3 (0.764); MOB2 (0.703); PBN1 (0.697); INN1 (0.684); YDR417C (0.655); YLR177W (0.612); WSC3 (0.612); QRI5 (0.573); VHS2 (0.572); LIP2 (0.568); VPS63 (0.566); MAP1 (0.566); PPT1 (0.527); CHS2 (0.514); PBS2 (0.514); RHO1 (0.49); RSA3 (0.483); YGR064W (0.483); SLG1 (0.481)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005297.1:37145-38896:+ | gene-YCL051W_AKU4011 | rna-NM_001178696.1_AKU4011 | cds-NP_009879.2_AKU4011 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000086.1:6930-8681:- | gene-YCL051W_BG1 | rna-NM_001178696.1_BG1 | cds-NP_009879.2_BG1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005505.1:25011-26762:+ | gene-YCL051W_Bruggeman | rna-NM_001178696.1_Bruggeman | cds-NP_009879.2_Bruggeman | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005521.1:37018-38769:+ | gene-YCL051W_CAT1 | rna-NM_001178696.1_CAT1 | cds-NP_009879.2_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005361.1:37828-39579:+ | gene-YCL051W_CBS1585 | rna-NM_001178696.1_CBS1585 | cds-NP_009879.2_CBS1585 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005345.1:36388-38139:+ | gene-YCL051W_CBS436 | rna-NM_001178696.1_CBS436 | cds-NP_009879.2_CBS436 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005329.1:25604-27377:+ | gene-YCL051W_CBS6412 | rna-NM_001178696.1_CBS6412 | cds-NP_009879.2_CBS6412 | 98.1 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005313.1:36622-38384:+ | gene-YCL051W_CBS6413 | rna-NM_001178696.1_CBS6413 | cds-NP_009879.2_CBS6413 | 98.8 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001524.1:35439-37190:+ | gene-YCL051W_CENPK1137D | rna-NM_001178696.1_CENPK1137D | cds-NP_009879.2_CENPK1137D | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005473.1:35378-37129:+ | gene-YCL051W_EthanolRed | rna-NM_001178696.1_EthanolRed | cds-NP_009879.2_EthanolRed | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005537.1:36141-37892:+ | gene-YCL051W_FaliES1 | rna-NM_001178696.1_FaliES1 | cds-NP_009879.2_FaliES1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000225.1:46446-48197:- | gene-YCL051W_JAY291 | rna-NM_001178696.1_JAY291 | cds-NP_009879.2_JAY291 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005409.1:23615-25366:+ | gene-YCL051W_MUCL30387 | rna-NM_001178696.1_MUCL30387 | cds-NP_009879.2_MUCL30387 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005441.1:23873-25624:+ | gene-YCL051W_MUCL30388 | rna-NM_001178696.1_MUCL30388 | cds-NP_009879.2_MUCL30388 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005281.1:38215-39966:+ | gene-YCL051W_MUCL39482 | rna-NM_001178696.1_MUCL39482 | cds-NP_009879.2_MUCL39482 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005425.1:24407-26158:+ | gene-YCL051W_MUCL42920 | rna-NM_001178696.1_MUCL42920 | cds-NP_009879.2_MUCL42920 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011812.1:35497-37248:+ | gene-YCL051W_NCIM3186 | rna-NM_001178696.1_NCIM3186 | cds-NP_009879.2_NCIM3186 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005265.1:38537-40288:+ | gene-YCL051W_NCYC1407 | rna-NM_001178696.1_NCYC1407 | cds-NP_009879.2_NCYC1407 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994142.1:36310-38061:+ | gene-YCL051W_PE2H3 | rna-NM_001178696.1_PE2H3 | cds-NP_009879.2_PE2H3 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999874.1:36267-38018:+ | gene-YCL051W_PE2H4 | rna-NM_001178696.1_PE2H4 | cds-NP_009879.2_PE2H4 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001135.5:35865-37616:+ | gene-YCL051W_S288C | rna-NM_001178696.1_S288C | cds-NP_009879.2_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000061.1:22992-24743:+ | gene-YCL051W_SA1 | rna-NM_001178696.1_SA1 | cds-NP_009879.2_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005489.1:36459-38210:+ | gene-YCL051W_ThermosaccDry | rna-NM_001178696.1_ThermosaccDry | cds-NP_009879.2_ThermosaccDry | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005457.1:42796-44547:+ | gene-YCL051W_VR1 | rna-NM_001178696.1_VR1 | cds-NP_009879.2_VR1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000004.1:36685-38436:+ | gene-YCL051W_ZTW1 | rna-NM_001178696.1_ZTW1 | cds-NP_009879.2_ZTW1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047489.1:66329-68095:+ | gene-YCL051W_Sparadoxus | rna-NM_001178696.1_Sparadoxus | cds-NP_009879.2_Sparadoxus | 88.3 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |