Gene name: LPP1
Reference locus (S288C): YDR503C
Gene biotype: protein_coding
Description: Lipid phosphate phosphatase; catalyzes Mg(2+)-independent dephosphorylation of phosphatidic acid (PA), lysophosphatidic acid, and diacylglycerol pyrophosphate; involved in control of the cellular levels of phosphatidylinositol and PA
Top 10 interactors (score): PAH1 (0.996); DGK1 (0.982); DGA1 (0.975); LRO1 (0.975); SLC1 (0.965); SPO14 (0.964); CDS1 (0.961); CPT1 (0.956); EPT1 (0.933); SCT1 (0.925); CAX4 (0.923); TMN3 (0.92); TAZ1 (0.917); TGL3 (0.912); GPT2 (0.907); SPO7 (0.899); DPP1 (0.859); ALE1 (0.85); TGL5 (0.848); SEC59 (0.816)
Homologues (species, bitscore): PPAPDC1B (Homo sapiens, 87.8); Ppapdc1b (Mus musculus, 84.3); ppapdc1b (Danio rerio, 89.4); ppapdc1b (Xenopus tropicalis, 93.6); CG12746 (Drosophila melanogaster, 69.7); F53C3.13 (Caenorhabditis elegans, 60.8); LPP3 (Arabidopsis thaliana, 86.3)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:1395027-1395851:- | gene-YDR503C_AKU4011 | rna-NM_001180811.3_AKU4011 | cds-NP_010791.3_AKU4011 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000073.1:36585-37409:- | gene-YDR503C_BG1 | rna-NM_001180811.3_BG1 | cds-NP_010791.3_BG1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:1426348-1427172:- | gene-YDR503C_Bruggeman | rna-NM_001180811.3_Bruggeman | cds-NP_010791.3_Bruggeman | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:1403527-1404351:- | gene-YDR503C_CAT1 | rna-NM_001180811.3_CAT1 | cds-NP_010791.3_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:1389269-1390093:- | gene-YDR503C_CBS1585 | rna-NM_001180811.3_CBS1585 | cds-NP_010791.3_CBS1585 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:1408624-1409448:- | gene-YDR503C_CBS436 | rna-NM_001180811.3_CBS436 | cds-NP_010791.3_CBS436 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:1384911-1385735:- | gene-YDR503C_CBS6412 | rna-NM_001180811.3_CBS6412 | cds-NP_010791.3_CBS6412 | 99.0 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:1407926-1408750:- | gene-YDR503C_CBS6413 | rna-NM_001180811.3_CBS6413 | cds-NP_010791.3_CBS6413 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:1453736-1454560:- | gene-YDR503C_CENPK1137D | rna-NM_001180811.3_CENPK1137D | cds-NP_010791.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:1398316-1399140:- | gene-YDR503C_EthanolRed | rna-NM_001180811.3_EthanolRed | cds-NP_010791.3_EthanolRed | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:1401869-1402693:- | gene-YDR503C_FaliES1 | rna-NM_001180811.3_FaliES1 | cds-NP_010791.3_FaliES1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000026.1:100119-100943:- | gene-YDR503C_JAY291 | rna-NM_001180811.3_JAY291 | cds-NP_010791.3_JAY291 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:1408873-1409697:- | gene-YDR503C_MUCL30387 | rna-NM_001180811.3_MUCL30387 | cds-NP_010791.3_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:1390866-1391690:- | gene-YDR503C_MUCL30388 | rna-NM_001180811.3_MUCL30388 | cds-NP_010791.3_MUCL30388 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:1380754-1381578:- | gene-YDR503C_MUCL39482 | rna-NM_001180811.3_MUCL39482 | cds-NP_010791.3_MUCL39482 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:1323546-1324370:- | gene-YDR503C_MUCL42920 | rna-NM_001180811.3_MUCL42920 | cds-NP_010791.3_MUCL42920 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:1454965-1455789:- | gene-YDR503C_NCIM3186 | rna-NM_001180811.3_NCIM3186 | cds-NP_010791.3_NCIM3186 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:1394540-1395364:- | gene-YDR503C_NCYC1407 | rna-NM_001180811.3_NCYC1407 | cds-NP_010791.3_NCYC1407 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:1405386-1406210:- | gene-YDR503C_PE2H3 | rna-NM_001180811.3_PE2H3 | cds-NP_010791.3_PE2H3 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:1410963-1411787:- | gene-YDR503C_PE2H4 | rna-NM_001180811.3_PE2H4 | cds-NP_010791.3_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:1455042-1455866:- | gene-YDR503C_S288C | rna-NM_001180811.3_S288C | cds-NP_010791.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000004.1:161267-162091:+ | gene-YDR503C_SA1 | rna-NM_001180811.3_SA1 | cds-NP_010791.3_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:1406091-1406915:- | gene-YDR503C_ThermosaccDry | rna-NM_001180811.3_ThermosaccDry | cds-NP_010791.3_ThermosaccDry | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:1421832-1422656:- | gene-YDR503C_VR1 | rna-NM_001180811.3_VR1 | cds-NP_010791.3_VR1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000008.1:448759-449583:- | gene-YDR503C_ZTW1 | rna-NM_001180811.3_ZTW1 | cds-NP_010791.3_ZTW1 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:1408968-1409792:- | gene-YDR503C_Sparadoxus | rna-NM_001180811.3_Sparadoxus | cds-NP_010791.3_Sparadoxus | 89.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |