Gene name: LOH1
Reference locus (S288C): YJL038C
Gene biotype: protein_coding
Description: Protein involved in outer spore wall assembly; likely involved directly in dityrosine layer assembly; induced during sporulation; repressed during vegetative growth by Sum1p and Hst1p; sequence similar to adjacent ORF, IRC18/YJL037W, and the irc18 loh1 double mutant exhibits reduced dityrosine fluorescence relative to the single mutants; SWAT-GFP and mCherry fusion proteins localize to the cytosol; proposed role in maintenance of genome integrity
Top 10 interactors (score): OSW7 (0.845); SHE10 (0.843); CDA1 (0.838); OSW1 (0.824); OSW5 (0.82); OSW2 (0.778); RRT12 (0.778); RRT8 (0.749); YGL138C (0.749); RRT5 (0.748); NPP1 (0.746); DIT2 (0.714); LDS2 (0.696); DTR1 (0.69); QDR1 (0.672); SPR1 (0.62); ADD37 (0.565); SPR3 (0.545); SGA1 (0.526); DIT1 (0.517)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005304.1:358070-358729:- | gene-YJL038C_AKU4011 | rna-NM_001181472.1_AKU4011 | cds-NP_012496.1_AKU4011 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000190.1:255351-256010:+ | gene-YJL038C_BG1 | rna-NM_001181472.1_BG1 | cds-NP_012496.1_BG1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005512.1:371521-372180:- | gene-YJL038C_Bruggeman | rna-NM_001181472.1_Bruggeman | cds-NP_012496.1_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005528.1:376219-376878:- | gene-YJL038C_CAT1 | rna-NM_001181472.1_CAT1 | cds-NP_012496.1_CAT1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005368.1:369734-370393:- | gene-YJL038C_CBS1585 | rna-NM_001181472.1_CBS1585 | cds-NP_012496.1_CBS1585 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005352.1:388093-388752:- | gene-YJL038C_CBS436 | rna-NM_001181472.1_CBS436 | cds-NP_012496.1_CBS436 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005336.1:358332-358991:- | gene-YJL038C_CBS6412 | rna-NM_001181472.1_CBS6412 | cds-NP_012496.1_CBS6412 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005320.1:360212-360871:- | gene-YJL038C_CBS6413 | rna-NM_001181472.1_CBS6413 | cds-NP_012496.1_CBS6413 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001531.1:357542-358201:- | gene-YJL038C_CENPK1137D | rna-NM_001181472.1_CENPK1137D | cds-NP_012496.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005480.1:361362-361944:- | gene-YJL038C_EthanolRed | rna-NM_001181472.1_EthanolRed | cds-NP_012496.1_EthanolRed | 81.0 | 86.9 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005544.1:373733-374392:- | gene-YJL038C_FaliES1 | rna-NM_001181472.1_FaliES1 | cds-NP_012496.1_FaliES1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000200.1:41032-41691:+ | gene-YJL038C_JAY291 | rna-NM_001181472.1_JAY291 | cds-NP_012496.1_JAY291 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005416.1:372499-373158:- | gene-YJL038C_MUCL30387 | rna-NM_001181472.1_MUCL30387 | cds-NP_012496.1_MUCL30387 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005448.1:368398-369057:- | gene-YJL038C_MUCL30388 | rna-NM_001181472.1_MUCL30388 | cds-NP_012496.1_MUCL30388 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005288.1:363058-363717:- | gene-YJL038C_MUCL39482 | rna-NM_001181472.1_MUCL39482 | cds-NP_012496.1_MUCL39482 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005432.1:368395-369054:- | gene-YJL038C_MUCL42920 | rna-NM_001181472.1_MUCL42920 | cds-NP_012496.1_MUCL42920 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011819.1:375094-375753:- | gene-YJL038C_NCIM3186 | rna-NM_001181472.1_NCIM3186 | cds-NP_012496.1_NCIM3186 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005272.1:361007-361666:- | gene-YJL038C_NCYC1407 | rna-NM_001181472.1_NCYC1407 | cds-NP_012496.1_NCYC1407 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994149.1:373086-373745:- | gene-YJL038C_PE2H3 | rna-NM_001181472.1_PE2H3 | cds-NP_012496.1_PE2H3 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999881.1:372731-373390:- | gene-YJL038C_PE2H4 | rna-NM_001181472.1_PE2H4 | cds-NP_012496.1_PE2H4 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001142.9:375115-375774:- | gene-YJL038C_S288C | rna-NM_001181472.1_S288C | cds-NP_012496.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000003.1:170616-171275:- | gene-YJL038C_SA1 | rna-NM_001181472.1_SA1 | cds-NP_012496.1_SA1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005496.1:367395-368054:- | gene-YJL038C_ThermosaccDry | rna-NM_001181472.1_ThermosaccDry | cds-NP_012496.1_ThermosaccDry | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005464.1:369242-369901:- | gene-YJL038C_VR1 | rna-NM_001181472.1_VR1 | cds-NP_012496.1_VR1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000021.1:348060-348719:- | gene-YJL038C_ZTW1 | rna-NM_001181472.1_ZTW1 | cds-NP_012496.1_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047496.1:373257-373916:- | gene-YJL038C_Sparadoxus | rna-NM_001181472.1_Sparadoxus | cds-NP_012496.1_Sparadoxus | 86.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |