Gene name: LOG1
Reference locus (S288C): YJL055W
Gene biotype: protein_coding
Description: LOG family protein YJL055W; Putative protein of unknown function; functions together with HAM1 to mediate resistance to 5-FU; specifically reduces the incorporation of 5-FU into RNA, without affecting uptake or incorporation of uracil into RNA; proposed to be involved in the metabolism of purine and pyrimidine base analogues; deletion mutants are sensitive to HAP and AHA
Top 10 interactors (score): HAM1 (0.935); APT2 (0.839); CPA2 (0.773); RGD2 (0.75); YGR035C (0.75); CPA1 (0.741); VID27 (0.698); ITT1 (0.698); HMS1 (0.696); ADE4 (0.691); MTQ1 (0.675); CAF16 (0.652); PIG2 (0.616); MOD5 (0.609); NAB6 (0.592); DUT1 (0.59); RSM24 (0.579); IPK1 (0.573); ADE6 (0.562); RAD51 (0.547)
Homologues (species, bitscore): LOG4 (Arabidopsis thaliana, 161.8)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005304.1:316172-316909:+ | gene-YJL055W_AKU4011 | rna-NM_001181488.1_AKU4011 | cds-NP_012480.1_AKU4011 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000190.1:296886-297623:- | gene-YJL055W_BG1 | rna-NM_001181488.1_BG1 | cds-NP_012480.1_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005512.1:328755-329492:+ | gene-YJL055W_Bruggeman | rna-NM_001181488.1_Bruggeman | cds-NP_012480.1_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005528.1:333989-334726:+ | gene-YJL055W_CAT1 | rna-NM_001181488.1_CAT1 | cds-NP_012480.1_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005368.1:327826-328563:+ | gene-YJL055W_CBS1585 | rna-NM_001181488.1_CBS1585 | cds-NP_012480.1_CBS1585 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005352.1:345882-346619:+ | gene-YJL055W_CBS436 | rna-NM_001181488.1_CBS436 | cds-NP_012480.1_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005336.1:316930-317667:+ | gene-YJL055W_CBS6412 | rna-NM_001181488.1_CBS6412 | cds-NP_012480.1_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005320.1:318277-319014:+ | gene-YJL055W_CBS6413 | rna-NM_001181488.1_CBS6413 | cds-NP_012480.1_CBS6413 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001531.1:315825-316562:+ | gene-YJL055W_CENPK1137D | rna-NM_001181488.1_CENPK1137D | cds-NP_012480.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005480.1:320009-320746:+ | gene-YJL055W_EthanolRed | rna-NM_001181488.1_EthanolRed | cds-NP_012480.1_EthanolRed | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005544.1:331584-332321:+ | gene-YJL055W_FaliES1 | rna-NM_001181488.1_FaliES1 | cds-NP_012480.1_FaliES1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000138.1:129222-129959:+ | gene-YJL055W_JAY291 | rna-NM_001181488.1_JAY291 | cds-NP_012480.1_JAY291 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005416.1:329910-330647:+ | gene-YJL055W_MUCL30387 | rna-NM_001181488.1_MUCL30387 | cds-NP_012480.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005448.1:325948-326685:+ | gene-YJL055W_MUCL30388 | rna-NM_001181488.1_MUCL30388 | cds-NP_012480.1_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005288.1:320580-321317:+ | gene-YJL055W_MUCL39482 | rna-NM_001181488.1_MUCL39482 | cds-NP_012480.1_MUCL39482 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005432.1:327275-328012:+ | gene-YJL055W_MUCL42920 | rna-NM_001181488.1_MUCL42920 | cds-NP_012480.1_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011819.1:333336-334073:+ | gene-YJL055W_NCIM3186 | rna-NM_001181488.1_NCIM3186 | cds-NP_012480.1_NCIM3186 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005272.1:319276-320013:+ | gene-YJL055W_NCYC1407 | rna-NM_001181488.1_NCYC1407 | cds-NP_012480.1_NCYC1407 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994149.1:331676-332413:+ | gene-YJL055W_PE2H3 | rna-NM_001181488.1_PE2H3 | cds-NP_012480.1_PE2H3 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999881.1:331321-332058:+ | gene-YJL055W_PE2H4 | rna-NM_001181488.1_PE2H4 | cds-NP_012480.1_PE2H4 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001142.9:333357-334094:+ | gene-YJL055W_S288C | rna-NM_001181488.1_S288C | cds-NP_012480.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000003.1:129239-129976:+ | gene-YJL055W_SA1 | rna-NM_001181488.1_SA1 | cds-NP_012480.1_SA1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005496.1:324997-325734:+ | gene-YJL055W_ThermosaccDry | rna-NM_001181488.1_ThermosaccDry | cds-NP_012480.1_ThermosaccDry | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005464.1:327487-328224:+ | gene-YJL055W_VR1 | rna-NM_001181488.1_VR1 | cds-NP_012480.1_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000021.1:306374-307111:+ | gene-YJL055W_ZTW1 | rna-NM_001181488.1_ZTW1 | cds-NP_012480.1_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047496.1:330449-331186:+ | gene-YJL055W_Sparadoxus | rna-NM_001181488.1_Sparadoxus | cds-NP_012480.1_Sparadoxus | 89.3 | 99.5 | Verified | 1 | 1 | 1 | False | True | False | False | False |