Gene name: LOC1
Reference locus (S288C): YFR001W
Gene biotype: protein_coding
Description: 60S ribosomal subunit assembly/export protein LOC1; Nuclear protein involved in asymmetric localization of ASH1 mRNA; binds double-stranded RNA in vitro; constituent of 66S pre-ribosomal particles; required at post-transcriptional step for efficient retrotransposition; absence results in decreased Ty1 Gag:GFP protein levels; relocalizes from nucleus to cytoplasm upon DNA replication stress
Top 10 interactors (score): EBP2 (0.999); PUF6 (0.998); NOC2 (0.998); RRP15 (0.997); NUG1 (0.997); CGR1 (0.996); NOP15 (0.996); NOP7 (0.996); RLP24 (0.995); DRS1 (0.994); MAK16 (0.994); NOP4 (0.994); RRP1 (0.994); BRX1 (0.991); RRS1 (0.991); SPB1 (0.99); NOP12 (0.99); RPF2 (0.988); CIC1 (0.988); NOC3 (0.988)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005300.1:139556-140170:+ | gene-YFR001W_AKU4011 | rna-NM_001179966.1_AKU4011 | cds-NP_116656.1_AKU4011 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000079.1:24452-25066:+ | gene-YFR001W_BG1 | rna-NM_001179966.1_BG1 | cds-NP_116656.1_BG1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005508.1:139122-139736:+ | gene-YFR001W_Bruggeman | rna-NM_001179966.1_Bruggeman | cds-NP_116656.1_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005524.1:144288-144902:+ | gene-YFR001W_CAT1 | rna-NM_001179966.1_CAT1 | cds-NP_116656.1_CAT1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005364.1:140381-140995:+ | gene-YFR001W_CBS1585 | rna-NM_001179966.1_CBS1585 | cds-NP_116656.1_CBS1585 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005348.1:114229-114843:+ | gene-YFR001W_CBS436 | rna-NM_001179966.1_CBS436 | cds-NP_116656.1_CBS436 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005332.1:140122-140736:+ | gene-YFR001W_CBS6412 | rna-NM_001179966.1_CBS6412 | cds-NP_116656.1_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005316.1:142632-143246:+ | gene-YFR001W_CBS6413 | rna-NM_001179966.1_CBS6413 | cds-NP_116656.1_CBS6413 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001527.1:145245-145859:+ | gene-YFR001W_CENPK1137D | rna-NM_001179966.1_CENPK1137D | cds-NP_116656.1_CENPK1137D | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005476.1:138542-139156:+ | gene-YFR001W_EthanolRed | rna-NM_001179966.1_EthanolRed | cds-NP_116656.1_EthanolRed | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005540.1:140189-140803:+ | gene-YFR001W_FaliES1 | rna-NM_001179966.1_FaliES1 | cds-NP_116656.1_FaliES1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000451.1:4297-4911:+ | gene-YFR001W_JAY291 | rna-NM_001179966.1_JAY291 | cds-NP_116656.1_JAY291 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005412.1:140753-141367:+ | gene-YFR001W_MUCL30387 | rna-NM_001179966.1_MUCL30387 | cds-NP_116656.1_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005444.1:138729-139343:+ | gene-YFR001W_MUCL30388 | rna-NM_001179966.1_MUCL30388 | cds-NP_116656.1_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005284.1:138825-139439:+ | gene-YFR001W_MUCL39482 | rna-NM_001179966.1_MUCL39482 | cds-NP_116656.1_MUCL39482 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005428.1:138088-138702:+ | gene-YFR001W_MUCL42920 | rna-NM_001179966.1_MUCL42920 | cds-NP_116656.1_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011815.1:149109-149723:+ | gene-YFR001W_NCIM3186 | rna-NM_001179966.1_NCIM3186 | cds-NP_116656.1_NCIM3186 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005268.1:139840-140454:+ | gene-YFR001W_NCYC1407 | rna-NM_001179966.1_NCYC1407 | cds-NP_116656.1_NCYC1407 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994145.1:158907-159521:+ | gene-YFR001W_PE2H3 | rna-NM_001179966.1_PE2H3 | cds-NP_116656.1_PE2H3 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999877.1:158455-159069:+ | gene-YFR001W_PE2H4 | rna-NM_001179966.1_PE2H4 | cds-NP_116656.1_PE2H4 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001138.5:149110-149724:+ | gene-YFR001W_S288C | rna-NM_001179966.1_S288C | cds-NP_116656.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000011.1:174501-175115:- | gene-YFR001W_SA1 | rna-NM_001179966.1_SA1 | cds-NP_116656.1_SA1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005492.1:139349-139963:+ | gene-YFR001W_ThermosaccDry | rna-NM_001179966.1_ThermosaccDry | cds-NP_116656.1_ThermosaccDry | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005460.1:154554-155168:+ | gene-YFR001W_VR1 | rna-NM_001179966.1_VR1 | cds-NP_116656.1_VR1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000013.1:69798-70413:+ | gene-YFR001W_ZTW1 | rna-NM_001179966.1_ZTW1 | cds-NP_116656.1_ZTW1 | 99.6 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047492.1:163000-163614:+ | gene-YFR001W_Sparadoxus | rna-NM_001179966.1_Sparadoxus | cds-NP_116656.1_Sparadoxus | 91.0 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | False | True |