Gene name: LMO1
Reference locus (S288C): YLL007C
Gene biotype: protein_coding
Description: Uncharacterized protein YLL007C; Homolog of mammalian ELMO (Engulfment and celL MOtility); upstream component for regulation through the small GTPase Rho5p; may form a complex with Dck1p that acts as a GEF for Rho5p; cytoplasmic protein that relocates to mitochondria under oxidative stress; implicated in mitophagy; not an essential protein
Top 10 interactors (score): DCK1 (0.953); RHO5 (0.863); LSP1 (0.573); SCH9 (0.501); SUR7 (0.497); CDC42 (0.493); CAP2 (0.453); ATG21 (0.45)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005306.1:122061-124058:- | gene-YLL007C_AKU4011 | rna-NM_001181827.1_AKU4011 | cds-NP_013094.1_AKU4011 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000212.1:85493-87490:- | gene-YLL007C_BG1 | rna-NM_001181827.1_BG1 | cds-NP_013094.1_BG1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005514.1:132178-134175:- | gene-YLL007C_Bruggeman | rna-NM_001181827.1_Bruggeman | cds-NP_013094.1_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005530.1:132974-134971:- | gene-YLL007C_CAT1 | rna-NM_001181827.1_CAT1 | cds-NP_013094.1_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005370.1:129660-131657:- | gene-YLL007C_CBS1585 | rna-NM_001181827.1_CBS1585 | cds-NP_013094.1_CBS1585 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005354.1:120026-122023:- | gene-YLL007C_CBS436 | rna-NM_001181827.1_CBS436 | cds-NP_013094.1_CBS436 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005338.1:128432-130429:- | gene-YLL007C_CBS6412 | rna-NM_001181827.1_CBS6412 | cds-NP_013094.1_CBS6412 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005322.1:129926-131923:- | gene-YLL007C_CBS6413 | rna-NM_001181827.1_CBS6413 | cds-NP_013094.1_CBS6413 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001533.1:119364-121361:- | gene-YLL007C_CENPK1137D | rna-NM_001181827.1_CENPK1137D | cds-NP_013094.1_CENPK1137D | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005482.1:122082-124079:- | gene-YLL007C_EthanolRed | rna-NM_001181827.1_EthanolRed | cds-NP_013094.1_EthanolRed | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005546.1:121653-123650:- | gene-YLL007C_FaliES1 | rna-NM_001181827.1_FaliES1 | cds-NP_013094.1_FaliES1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000083.1:31723-33719:+ | gene-YLL007C_JAY291 | rna-NM_001181827.1_JAY291 | cds-NP_013094.1_JAY291 | 99.6 | 99.9 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005418.1:129783-131780:- | gene-YLL007C_MUCL30387 | rna-NM_001181827.1_MUCL30387 | cds-NP_013094.1_MUCL30387 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005450.1:134281-136278:- | gene-YLL007C_MUCL30388 | rna-NM_001181827.1_MUCL30388 | cds-NP_013094.1_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005290.1:130131-132128:- | gene-YLL007C_MUCL39482 | rna-NM_001181827.1_MUCL39482 | cds-NP_013094.1_MUCL39482 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005434.1:129799-131796:- | gene-YLL007C_MUCL42920 | rna-NM_001181827.1_MUCL42920 | cds-NP_013094.1_MUCL42920 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011821.1:134276-136273:- | gene-YLL007C_NCIM3186 | rna-NM_001181827.1_NCIM3186 | cds-NP_013094.1_NCIM3186 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005274.1:121734-123731:- | gene-YLL007C_NCYC1407 | rna-NM_001181827.1_NCYC1407 | cds-NP_013094.1_NCYC1407 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994151.1:128082-130079:- | gene-YLL007C_PE2H3 | rna-NM_001181827.1_PE2H3 | cds-NP_013094.1_PE2H3 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999883.1:127823-129820:- | gene-YLL007C_PE2H4 | rna-NM_001181827.1_PE2H4 | cds-NP_013094.1_PE2H4 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001144.5:134302-136299:- | gene-YLL007C_S288C | rna-NM_001181827.1_S288C | cds-NP_013094.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000062.1:37268-39265:- | gene-YLL007C_SA1 | rna-NM_001181827.1_SA1 | cds-NP_013094.1_SA1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005498.1:122156-124153:- | gene-YLL007C_ThermosaccDry | rna-NM_001181827.1_ThermosaccDry | cds-NP_013094.1_ThermosaccDry | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005466.1:135756-137753:- | gene-YLL007C_VR1 | rna-NM_001181827.1_VR1 | cds-NP_013094.1_VR1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000023.1:121484-123481:- | gene-YLL007C_ZTW1 | rna-NM_001181827.1_ZTW1 | cds-NP_013094.1_ZTW1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047498.1:129861-131858:- | gene-YLL007C_Sparadoxus | rna-NM_001181827.1_Sparadoxus | cds-NP_013094.1_Sparadoxus | 89.4 | 99.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |