Gene name: LIP5
Reference locus (S288C): YOR196C
Gene biotype: protein_coding
Description: Lipoyl synthase, mitochondrial; Protein involved in biosynthesis of the coenzyme lipoic acid; has similarity to E. coli lipoic acid synthase; Belongs to the radical SAM superfamily. Lipoyl synthase family
Top 10 interactors (score): LIP2 (0.999); AIM22 (0.997); NFU1 (0.995); IBA57 (0.992); GCV3 (0.991); ISA1 (0.978); ISA2 (0.978); BOL3 (0.976); BOL1 (0.97); BIO2 (0.964); GRX5 (0.959); KGD2 (0.93); YAH1 (0.927); ISD11 (0.922); NFS1 (0.919); ISU1 (0.918); ISU2 (0.914); JAC1 (0.906); RLI1 (0.881); ACP1 (0.877)
Homologues (species, bitscore): LIAS (Homo sapiens, 399.1); Lias (Mus musculus, 404.8); lias (Danio rerio, 407.5); lias (Xenopus tropicalis, 365.2); Las (Drosophila melanogaster, 422.9); M01F1.3 (Caenorhabditis elegans, 391.3); AT5G08415 (Arabidopsis thaliana, 379.4)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005309.1:706379-707623:- | gene-YOR196C_AKU4011 | rna-NM_001183615.1_AKU4011 | cds-NP_014839.1_AKU4011 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000123.1:108419-109663:- | gene-YOR196C_BG1 | rna-NM_001183615.1_BG1 | cds-NP_014839.1_BG1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005517.1:691210-692454:- | gene-YOR196C_Bruggeman | rna-NM_001183615.1_Bruggeman | cds-NP_014839.1_Bruggeman | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005533.1:692493-693737:- | gene-YOR196C_CAT1 | rna-NM_001183615.1_CAT1 | cds-NP_014839.1_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005373.1:689366-690610:- | gene-YOR196C_CBS1585 | rna-NM_001183615.1_CBS1585 | cds-NP_014839.1_CBS1585 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005357.1:688055-689299:- | gene-YOR196C_CBS436 | rna-NM_001183615.1_CBS436 | cds-NP_014839.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005341.1:686484-687728:- | gene-YOR196C_CBS6412 | rna-NM_001183615.1_CBS6412 | cds-NP_014839.1_CBS6412 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005325.1:695123-696367:- | gene-YOR196C_CBS6413 | rna-NM_001183615.1_CBS6413 | cds-NP_014839.1_CBS6413 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001536.1:715348-716592:- | gene-YOR196C_CENPK1137D | rna-NM_001183615.1_CENPK1137D | cds-NP_014839.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005485.1:682509-683753:- | gene-YOR196C_EthanolRed | rna-NM_001183615.1_EthanolRed | cds-NP_014839.1_EthanolRed | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005549.1:687906-689150:- | gene-YOR196C_FaliES1 | rna-NM_001183615.1_FaliES1 | cds-NP_014839.1_FaliES1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000381.1:137598-138842:+ | gene-YOR196C_JAY291 | rna-NM_001183615.1_JAY291 | cds-NP_014839.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005421.1:695176-696420:- | gene-YOR196C_MUCL30387 | rna-NM_001183615.1_MUCL30387 | cds-NP_014839.1_MUCL30387 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005453.1:702594-703838:- | gene-YOR196C_MUCL30388 | rna-NM_001183615.1_MUCL30388 | cds-NP_014839.1_MUCL30388 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005293.1:696695-697939:- | gene-YOR196C_MUCL39482 | rna-NM_001183615.1_MUCL39482 | cds-NP_014839.1_MUCL39482 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005437.1:706279-707523:- | gene-YOR196C_MUCL42920 | rna-NM_001183615.1_MUCL42920 | cds-NP_014839.1_MUCL42920 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011824.1:715482-716726:- | gene-YOR196C_NCIM3186 | rna-NM_001183615.1_NCIM3186 | cds-NP_014839.1_NCIM3186 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005277.1:696793-698037:- | gene-YOR196C_NCYC1407 | rna-NM_001183615.1_NCYC1407 | cds-NP_014839.1_NCYC1407 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994154.1:696191-697435:- | gene-YOR196C_PE2H3 | rna-NM_001183615.1_PE2H3 | cds-NP_014839.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999886.1:706568-707812:- | gene-YOR196C_PE2H4 | rna-NM_001183615.1_PE2H4 | cds-NP_014839.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001147.6:715593-716837:- | gene-YOR196C_S288C | rna-NM_001183615.1_S288C | cds-NP_014839.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000006.1:125599-126843:- | gene-YOR196C_SA1 | rna-NM_001183615.1_SA1 | cds-NP_014839.1_SA1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005501.1:687091-688335:- | gene-YOR196C_ThermosaccDry | rna-NM_001183615.1_ThermosaccDry | cds-NP_014839.1_ThermosaccDry | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005469.1:750632-751876:- | gene-YOR196C_VR1 | rna-NM_001183615.1_VR1 | cds-NP_014839.1_VR1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000032.1:420006-421250:- | gene-YOR196C_ZTW1 | rna-NM_001183615.1_ZTW1 | cds-NP_014839.1_ZTW1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047501.1:693005-694249:- | gene-YOR196C_Sparadoxus | rna-NM_001183615.1_Sparadoxus | cds-NP_014839.1_Sparadoxus | 91.0 | 99.9 | Verified | 1 | 1 | 0 | False | False | False | True | False |