Gene name: LIP2
Reference locus (S288C): YLR239C
Gene biotype: protein_coding
Description: Lipoyl ligase; involved in the modification of mitochondrial enzymes by the attachment of lipoic acid groups; Belongs to the LipB family
Top 10 interactors (score): LIP5 (0.999); GCV3 (0.998); AIM22 (0.992); ACP1 (0.969); ETR1 (0.885); CEM1 (0.85); HTD2 (0.847); PDX1 (0.815); KGD2 (0.812); FAS2 (0.804); FAS1 (0.801); LPD1 (0.764); YAH1 (0.715); TRM7 (0.706); NFU1 (0.698); MCH1 (0.693); RSM22 (0.691); BOL3 (0.679); PUF3 (0.669); LAT1 (0.663)
Homologues (species, bitscore): LIPT2 (Homo sapiens, 86.7); Lipt2 (Mus musculus, 89.4); lipt2 (Danio rerio, 101.3); CG9804 (Drosophila melanogaster, 89.4); AT4G31050 (Arabidopsis thaliana, 98.2)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005306.1:570539-571525:- | gene-YLR239C_AKU4011 | rna-NM_001182126.1_AKU4011 | cds-NP_013340.1_AKU4011 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000170.1:160383-161369:+ | gene-YLR239C_BG1 | rna-NM_001182126.1_BG1 | cds-NP_013340.1_BG1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005514.1:604777-605763:- | gene-YLR239C_Bruggeman | rna-NM_001182126.1_Bruggeman | cds-NP_013340.1_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005530.1:603901-604887:- | gene-YLR239C_CAT1 | rna-NM_001182126.1_CAT1 | cds-NP_013340.1_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005370.1:606034-607020:- | gene-YLR239C_CBS1585 | rna-NM_001182126.1_CBS1585 | cds-NP_013340.1_CBS1585 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005354.1:590243-591229:- | gene-YLR239C_CBS436 | rna-NM_001182126.1_CBS436 | cds-NP_013340.1_CBS436 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005338.1:569009-569995:- | gene-YLR239C_CBS6412 | rna-NM_001182126.1_CBS6412 | cds-NP_013340.1_CBS6412 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005322.1:606329-607315:- | gene-YLR239C_CBS6413 | rna-NM_001182126.1_CBS6413 | cds-NP_013340.1_CBS6413 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001533.1:600943-601929:- | gene-YLR239C_CENPK1137D | rna-NM_001182126.1_CENPK1137D | cds-NP_013340.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005482.1:564076-565062:- | gene-YLR239C_EthanolRed | rna-NM_001182126.1_EthanolRed | cds-NP_013340.1_EthanolRed | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005546.1:593001-593987:- | gene-YLR239C_FaliES1 | rna-NM_001182126.1_FaliES1 | cds-NP_013340.1_FaliES1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000136.1:64903-65889:+ | gene-YLR239C_JAY291 | rna-NM_001182126.1_JAY291 | cds-NP_013340.1_JAY291 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005418.1:605634-606620:- | gene-YLR239C_MUCL30387 | rna-NM_001182126.1_MUCL30387 | cds-NP_013340.1_MUCL30387 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005450.1:609756-610742:- | gene-YLR239C_MUCL30388 | rna-NM_001182126.1_MUCL30388 | cds-NP_013340.1_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005290.1:607015-608001:- | gene-YLR239C_MUCL39482 | rna-NM_001182126.1_MUCL39482 | cds-NP_013340.1_MUCL39482 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005434.1:601777-602763:- | gene-YLR239C_MUCL42920 | rna-NM_001182126.1_MUCL42920 | cds-NP_013340.1_MUCL42920 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011821.1:616306-617292:- | gene-YLR239C_NCIM3186 | rna-NM_001182126.1_NCIM3186 | cds-NP_013340.1_NCIM3186 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005274.1:594004-594990:- | gene-YLR239C_NCYC1407 | rna-NM_001182126.1_NCYC1407 | cds-NP_013340.1_NCYC1407 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994151.1:597721-598707:- | gene-YLR239C_PE2H3 | rna-NM_001182126.1_PE2H3 | cds-NP_013340.1_PE2H3 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999883.1:597465-598451:- | gene-YLR239C_PE2H4 | rna-NM_001182126.1_PE2H4 | cds-NP_013340.1_PE2H4 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001144.5:616332-617318:- | gene-YLR239C_S288C | rna-NM_001182126.1_S288C | cds-NP_013340.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000013.1:65154-66140:+ | gene-YLR239C_SA1 | rna-NM_001182126.1_SA1 | cds-NP_013340.1_SA1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005498.1:595501-596487:- | gene-YLR239C_ThermosaccDry | rna-NM_001182126.1_ThermosaccDry | cds-NP_013340.1_ThermosaccDry | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005466.1:606835-607821:- | gene-YLR239C_VR1 | rna-NM_001182126.1_VR1 | cds-NP_013340.1_VR1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000024.1:119817-120803:- | gene-YLR239C_ZTW1 | rna-NM_001182126.1_ZTW1 | cds-NP_013340.1_ZTW1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047498.1:581002-581988:- | gene-YLR239C_Sparadoxus | rna-NM_001182126.1_Sparadoxus | cds-NP_013340.1_Sparadoxus | 89.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |