Gene name: LIP1
Reference locus (S288C): YMR298W
Gene biotype: protein_coding
Description: Ceramide synthase subunit; single-span ER membrane protein associated with Lag1p and Lac1p and required for ceramide synthase activity, null mutant grows extremely slowly and is defective in ceramide synthesis; Belongs to the LIP1 family
Top 10 interactors (score): LAC1 (0.998); LAG1 (0.997); SUR2 (0.991); SCS7 (0.954); LCB2 (0.779); TSC3 (0.755); AUR1 (0.745); LCB3 (0.741); YPC1 (0.717); LCB1 (0.705); ELO3 (0.7); YDC1 (0.699); KTR5 (0.696); TSC10 (0.651); SEC62 (0.647); BSC6 (0.612); GUP1 (0.595); SLM2 (0.593); PIS1 (0.592); ISC1 (0.592)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005307.1:902867-903319:+ | gene-YMR298W_AKU4011 | rna-NM_001182807.1_AKU4011 | cds-NP_014027.1_AKU4011 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000069.1:50388-50840:- | gene-YMR298W_BG1 | rna-NM_001182807.1_BG1 | cds-NP_014027.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005515.1:848076-848528:+ | gene-YMR298W_Bruggeman | rna-NM_001182807.1_Bruggeman | cds-NP_014027.1_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005531.1:851359-851811:+ | gene-YMR298W_CAT1 | rna-NM_001182807.1_CAT1 | cds-NP_014027.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005371.1:835118-835570:+ | gene-YMR298W_CBS1585 | rna-NM_001182807.1_CBS1585 | cds-NP_014027.1_CBS1585 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005355.1:857431-857883:+ | gene-YMR298W_CBS436 | rna-NM_001182807.1_CBS436 | cds-NP_014027.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005339.1:946693-947145:+ | gene-YMR298W_CBS6412 | rna-NM_001182807.1_CBS6412 | cds-NP_014027.1_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005323.1:834237-834689:+ | gene-YMR298W_CBS6413 | rna-NM_001182807.1_CBS6413 | cds-NP_014027.1_CBS6413 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001534.1:858356-858808:+ | gene-YMR298W_CENPK1137D | rna-NM_001182807.1_CENPK1137D | cds-NP_014027.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005486.1:895556-896008:+ | gene-YMR298W_EthanolRed | rna-NM_001182807.1_EthanolRed | cds-NP_014027.1_EthanolRed | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005547.1:841583-842035:+ | gene-YMR298W_FaliES1 | rna-NM_001182807.1_FaliES1 | cds-NP_014027.1_FaliES1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000262.1:9696-10148:- | gene-YMR298W_JAY291 | rna-NM_001182807.1_JAY291 | cds-NP_014027.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005419.1:841900-842352:+ | gene-YMR298W_MUCL30387 | rna-NM_001182807.1_MUCL30387 | cds-NP_014027.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005451.1:851294-851746:+ | gene-YMR298W_MUCL30388 | rna-NM_001182807.1_MUCL30388 | cds-NP_014027.1_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005291.1:836183-836635:+ | gene-YMR298W_MUCL39482 | rna-NM_001182807.1_MUCL39482 | cds-NP_014027.1_MUCL39482 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005435.1:845009-845461:+ | gene-YMR298W_MUCL42920 | rna-NM_001182807.1_MUCL42920 | cds-NP_014027.1_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011822.1:863773-864225:+ | gene-YMR298W_NCIM3186 | rna-NM_001182807.1_NCIM3186 | cds-NP_014027.1_NCIM3186 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005275.1:835837-836289:+ | gene-YMR298W_NCYC1407 | rna-NM_001182807.1_NCYC1407 | cds-NP_014027.1_NCYC1407 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994152.1:851655-852107:+ | gene-YMR298W_PE2H3 | rna-NM_001182807.1_PE2H3 | cds-NP_014027.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999884.1:847628-848080:+ | gene-YMR298W_PE2H4 | rna-NM_001182807.1_PE2H4 | cds-NP_014027.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001145.3:863819-864271:+ | gene-YMR298W_S288C | rna-NM_001182807.1_S288C | cds-NP_014027.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000036.1:41613-42065:+ | gene-YMR298W_SA1 | rna-NM_001182807.1_SA1 | cds-NP_014027.1_SA1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005499.1:837751-838203:+ | gene-YMR298W_ThermosaccDry | rna-NM_001182807.1_ThermosaccDry | cds-NP_014027.1_ThermosaccDry | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005467.1:851508-851960:+ | gene-YMR298W_VR1 | rna-NM_001182807.1_VR1 | cds-NP_014027.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000028.1:252990-253442:+ | gene-YMR298W_ZTW1 | rna-NM_001182807.1_ZTW1 | cds-NP_014027.1_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047499.1:856391-856843:+ | gene-YMR298W_Sparadoxus | rna-NM_001182807.1_Sparadoxus | cds-NP_014027.1_Sparadoxus | 91.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |