Gene name: LIN1
Reference locus (S288C): YHR156C
Gene biotype: protein_coding
Description: CD2 antigen cytoplasmic tail-binding protein 2; Protein LIN1; Non-essential component of U5 snRNP; nuclear protein; physically interacts with Irr1p of cohesin complex; may link together proteins involved in chromosome segregation, mRNA splicing and DNA replication
Top 10 interactors (score): PRP8 (0.999); SNU114 (0.999); DIB1 (0.999); PRP28 (0.999); SMB1 (0.998); BRR2 (0.998); AAR2 (0.997); PRP6 (0.994); SME1 (0.979); SMD1 (0.954); SMX3 (0.949); SMD2 (0.944); SMD3 (0.938); SNU66 (0.928); SMX2 (0.919); PRP18 (0.904); PRP3 (0.879); BUD13 (0.843); NNR1 (0.814); PRP21 (0.772)
Homologues (species, bitscore): CD2BP2 (Homo sapiens, 56.2); Cd2bp2 (Mus musculus, 53.1); holn1 (Drosophila melanogaster, 60.8)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005302.1:398475-399497:- | gene-YHR156C_AKU4011 | rna-NM_001179287.1_AKU4011 | cds-NP_012026.1_AKU4011 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000141.1:118240-119262:+ | gene-YHR156C_BG1 | rna-NM_001179287.1_BG1 | cds-NP_012026.1_BG1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005510.1:405715-406737:- | gene-YHR156C_Bruggeman | rna-NM_001179287.1_Bruggeman | cds-NP_012026.1_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005526.1:401128-402150:- | gene-YHR156C_CAT1 | rna-NM_001179287.1_CAT1 | cds-NP_012026.1_CAT1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005366.1:397932-398954:- | gene-YHR156C_CBS1585 | rna-NM_001179287.1_CBS1585 | cds-NP_012026.1_CBS1585 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005350.1:395381-396403:- | gene-YHR156C_CBS436 | rna-NM_001179287.1_CBS436 | cds-NP_012026.1_CBS436 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005334.1:398372-399394:- | gene-YHR156C_CBS6412 | rna-NM_001179287.1_CBS6412 | cds-NP_012026.1_CBS6412 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005318.1:398812-399834:- | gene-YHR156C_CBS6413 | rna-NM_001179287.1_CBS6413 | cds-NP_012026.1_CBS6413 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001529.1:404556-405578:- | gene-YHR156C_CENPK1137D | rna-NM_001179287.1_CENPK1137D | cds-NP_012026.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005478.1:457013-458035:- | gene-YHR156C_EthanolRed | rna-NM_001179287.1_EthanolRed | cds-NP_012026.1_EthanolRed | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005542.1:399456-400478:- | gene-YHR156C_FaliES1 | rna-NM_001179287.1_FaliES1 | cds-NP_012026.1_FaliES1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000017.1:39354-40376:+ | gene-YHR156C_JAY291 | rna-NM_001179287.1_JAY291 | cds-NP_012026.1_JAY291 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005414.1:406795-407817:- | gene-YHR156C_MUCL30387 | rna-NM_001179287.1_MUCL30387 | cds-NP_012026.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005446.1:406237-407259:- | gene-YHR156C_MUCL30388 | rna-NM_001179287.1_MUCL30388 | cds-NP_012026.1_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005286.1:397843-398865:- | gene-YHR156C_MUCL39482 | rna-NM_001179287.1_MUCL39482 | cds-NP_012026.1_MUCL39482 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005430.1:404400-405422:- | gene-YHR156C_MUCL42920 | rna-NM_001179287.1_MUCL42920 | cds-NP_012026.1_MUCL42920 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011817.1:411266-412288:- | gene-YHR156C_NCIM3186 | rna-NM_001179287.1_NCIM3186 | cds-NP_012026.1_NCIM3186 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005270.1:400301-401323:- | gene-YHR156C_NCYC1407 | rna-NM_001179287.1_NCYC1407 | cds-NP_012026.1_NCYC1407 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994147.1:399441-400463:- | gene-YHR156C_PE2H3 | rna-NM_001179287.1_PE2H3 | cds-NP_012026.1_PE2H3 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999879.1:406868-407890:- | gene-YHR156C_PE2H4 | rna-NM_001179287.1_PE2H4 | cds-NP_012026.1_PE2H4 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001140.6:411384-412406:- | gene-YHR156C_S288C | rna-NM_001179287.1_S288C | cds-NP_012026.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000070.1:39411-40433:+ | gene-YHR156C_SA1 | rna-NM_001179287.1_SA1 | cds-NP_012026.1_SA1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005494.1:400539-401561:- | gene-YHR156C_ThermosaccDry | rna-NM_001179287.1_ThermosaccDry | cds-NP_012026.1_ThermosaccDry | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005462.1:408363-409385:- | gene-YHR156C_VR1 | rna-NM_001179287.1_VR1 | cds-NP_012026.1_VR1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000017.1:390779-391801:- | gene-YHR156C_ZTW1 | rna-NM_001179287.1_ZTW1 | cds-NP_012026.1_ZTW1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047494.1:396868-397923:- | gene-YHR156C_Sparadoxus | rna-NM_001179287.1_Sparadoxus | cds-NP_012026.1_Sparadoxus | 82.8 | 99.3 | Verified | 1 | 1 | 1 | False | True | False | False | False |