Gene name: LIF1
Reference locus (S288C): YGL090W
Gene biotype: protein_coding
Description: Ligase-interacting factor 1; Component of the DNA ligase IV complex; this complex mediates nonhomologous end joining in DNA double-strand break repair; physically interacts with Dnl4p and Nej1p; homologous to mammalian XRCC4 protein
Top 10 interactors (score): NEJ1 (0.999); DNL4 (0.999); YKU70 (0.973); YKU80 (0.955); POL4 (0.95); SPP382 (0.81); XRS2 (0.788); MRE11 (0.786); RAD51 (0.785); CDC9 (0.785); RAD52 (0.762); EXO1 (0.748); DNA2 (0.744); RAD27 (0.71); SAE2 (0.691); MEC1 (0.684); RAD55 (0.676); SGS1 (0.67); RAD57 (0.616); RAD59 (0.612)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005301.1:346324-347589:+ | gene-YGL090W_AKU4011 | rna-NM_001180955.1_AKU4011 | cds-NP_011425.1_AKU4011 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000132.1:57828-59093:- | gene-YGL090W_BG1 | rna-NM_001180955.1_BG1 | cds-NP_011425.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005509.1:348816-350081:+ | gene-YGL090W_Bruggeman | rna-NM_001180955.1_Bruggeman | cds-NP_011425.1_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005525.1:345709-346974:+ | gene-YGL090W_CAT1 | rna-NM_001180955.1_CAT1 | cds-NP_011425.1_CAT1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005365.1:349649-350914:+ | gene-YGL090W_CBS1585 | rna-NM_001180955.1_CBS1585 | cds-NP_011425.1_CBS1585 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005349.1:343933-345198:+ | gene-YGL090W_CBS436 | rna-NM_001180955.1_CBS436 | cds-NP_011425.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005333.1:334030-335295:+ | gene-YGL090W_CBS6412 | rna-NM_001180955.1_CBS6412 | cds-NP_011425.1_CBS6412 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005317.1:343955-345220:+ | gene-YGL090W_CBS6413 | rna-NM_001180955.1_CBS6413 | cds-NP_011425.1_CBS6413 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001528.1:343506-344771:+ | gene-YGL090W_CENPK1137D | rna-NM_001180955.1_CENPK1137D | cds-NP_011425.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005477.1:335409-336674:+ | gene-YGL090W_EthanolRed | rna-NM_001180955.1_EthanolRed | cds-NP_011425.1_EthanolRed | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005541.1:337970-339235:+ | gene-YGL090W_FaliES1 | rna-NM_001180955.1_FaliES1 | cds-NP_011425.1_FaliES1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000369.1:23580-24845:+ | gene-YGL090W_JAY291 | rna-NM_001180955.1_JAY291 | cds-NP_011425.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005413.1:345793-347058:+ | gene-YGL090W_MUCL30387 | rna-NM_001180955.1_MUCL30387 | cds-NP_011425.1_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005445.1:348779-350044:+ | gene-YGL090W_MUCL30388 | rna-NM_001180955.1_MUCL30388 | cds-NP_011425.1_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005285.1:346177-347442:+ | gene-YGL090W_MUCL39482 | rna-NM_001180955.1_MUCL39482 | cds-NP_011425.1_MUCL39482 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005429.1:350704-351969:+ | gene-YGL090W_MUCL42920 | rna-NM_001180955.1_MUCL42920 | cds-NP_011425.1_MUCL42920 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011816.1:343319-344584:+ | gene-YGL090W_NCIM3186 | rna-NM_001180955.1_NCIM3186 | cds-NP_011425.1_NCIM3186 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005269.1:337712-338977:+ | gene-YGL090W_NCYC1407 | rna-NM_001180955.1_NCYC1407 | cds-NP_011425.1_NCYC1407 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994146.1:339346-340611:+ | gene-YGL090W_PE2H3 | rna-NM_001180955.1_PE2H3 | cds-NP_011425.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999878.1:344343-345608:+ | gene-YGL090W_PE2H4 | rna-NM_001180955.1_PE2H4 | cds-NP_011425.1_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001139.9:343319-344584:+ | gene-YGL090W_S288C | rna-NM_001180955.1_S288C | cds-NP_011425.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000089.1:20700-21965:+ | gene-YGL090W_SA1 | rna-NM_001180955.1_SA1 | cds-NP_011425.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005493.1:338223-339488:+ | gene-YGL090W_ThermosaccDry | rna-NM_001180955.1_ThermosaccDry | cds-NP_011425.1_ThermosaccDry | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005461.1:448084-449349:+ | gene-YGL090W_VR1 | rna-NM_001180955.1_VR1 | cds-NP_011425.1_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000014.1:335577-336842:+ | gene-YGL090W_ZTW1 | rna-NM_001180955.1_ZTW1 | cds-NP_011425.1_ZTW1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047493.1:341264-342504:+ | gene-YGL090W_Sparadoxus | rna-NM_001180955.1_Sparadoxus | cds-NP_011425.1_Sparadoxus | 83.7 | 98.0 | Verified | 1 | 1 | 0 | False | False | False | True | False |