Gene name: LHP1
Reference locus (S288C): YDL051W
Gene biotype: protein_coding
Description: La protein homolog; RNA binding protein required for maturation of tRNA and U6 snRNA; acts as a molecular chaperone for RNAs transcribed by polymerase III; homologous to human La (SS-B) autoantigen
Top 10 interactors (score): GCD10 (0.992); KRR1 (0.987); RRS1 (0.987); DBP3 (0.986); CIC1 (0.984); NOP7 (0.984); NOP56 (0.983); HAS1 (0.982); NOP2 (0.981); RPF2 (0.978); NHP2 (0.975); NOP15 (0.975); YCR087C-A (0.974); DBP9 (0.973); NUG1 (0.973); NOC2 (0.971); RLP24 (0.968); SXM1 (0.966); FPR4 (0.963); NOP58 (0.961)
Homologues (species, bitscore): LARP7 (Homo sapiens, 72.0); Ssb (Mus musculus, 70.9); larp7 (Danio rerio, 72.4); ssb (Xenopus tropicalis, 73.6); La (Drosophila melanogaster, 70.1); C44E4.4 (Caenorhabditis elegans, 71.6); La1 (Arabidopsis thaliana, 99.0)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:348520-349347:+ | gene-YDL051W_AKU4011 | rna-NM_001180110.1_AKU4011 | cds-NP_010232.1_AKU4011 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000102.1:200325-201152:- | gene-YDL051W_BG1 | rna-NM_001180110.1_BG1 | cds-NP_010232.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:366341-367168:+ | gene-YDL051W_Bruggeman | rna-NM_001180110.1_Bruggeman | cds-NP_010232.1_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:363285-364112:+ | gene-YDL051W_CAT1 | rna-NM_001180110.1_CAT1 | cds-NP_010232.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:346800-347627:+ | gene-YDL051W_CBS1585 | rna-NM_001180110.1_CBS1585 | cds-NP_010232.1_CBS1585 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:363505-364332:+ | gene-YDL051W_CBS436 | rna-NM_001180110.1_CBS436 | cds-NP_010232.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:344868-345695:+ | gene-YDL051W_CBS6412 | rna-NM_001180110.1_CBS6412 | cds-NP_010232.1_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:364894-365721:+ | gene-YDL051W_CBS6413 | rna-NM_001180110.1_CBS6413 | cds-NP_010232.1_CBS6413 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:362768-363595:+ | gene-YDL051W_CENPK1137D | rna-NM_001180110.1_CENPK1137D | cds-NP_010232.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:359353-360180:+ | gene-YDL051W_EthanolRed | rna-NM_001180110.1_EthanolRed | cds-NP_010232.1_EthanolRed | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:365600-366427:+ | gene-YDL051W_FaliES1 | rna-NM_001180110.1_FaliES1 | cds-NP_010232.1_FaliES1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000378.1:4532-5359:- | gene-YDL051W_JAY291 | rna-NM_001180110.1_JAY291 | cds-NP_010232.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:363730-364557:+ | gene-YDL051W_MUCL30387 | rna-NM_001180110.1_MUCL30387 | cds-NP_010232.1_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:354857-355684:+ | gene-YDL051W_MUCL30388 | rna-NM_001180110.1_MUCL30388 | cds-NP_010232.1_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:347917-348744:+ | gene-YDL051W_MUCL39482 | rna-NM_001180110.1_MUCL39482 | cds-NP_010232.1_MUCL39482 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:269923-270750:+ | gene-YDL051W_MUCL42920 | rna-NM_001180110.1_MUCL42920 | cds-NP_010232.1_MUCL42920 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:363875-364702:+ | gene-YDL051W_NCIM3186 | rna-NM_001180110.1_NCIM3186 | cds-NP_010232.1_NCIM3186 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:347906-348733:+ | gene-YDL051W_NCYC1407 | rna-NM_001180110.1_NCYC1407 | cds-NP_010232.1_NCYC1407 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:355079-355906:+ | gene-YDL051W_PE2H3 | rna-NM_001180110.1_PE2H3 | cds-NP_010232.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:355079-355906:+ | gene-YDL051W_PE2H4 | rna-NM_001180110.1_PE2H4 | cds-NP_010232.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:363952-364779:+ | gene-YDL051W_S288C | rna-NM_001180110.1_S288C | cds-NP_010232.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000010.1:70155-70982:- | gene-YDL051W_SA1 | rna-NM_001180110.1_SA1 | cds-NP_010232.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:365052-365879:+ | gene-YDL051W_ThermosaccDry | rna-NM_001180110.1_ThermosaccDry | cds-NP_010232.1_ThermosaccDry | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:367968-368795:+ | gene-YDL051W_VR1 | rna-NM_001180110.1_VR1 | cds-NP_010232.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000006.1:362982-363809:+ | gene-YDL051W_ZTW1 | rna-NM_001180110.1_ZTW1 | cds-NP_010232.1_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:365426-366253:+ | gene-YDL051W_Sparadoxus | rna-NM_001180110.1_Sparadoxus | cds-NP_010232.1_Sparadoxus | 93.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |