Gene name: LEA1
Reference locus (S288C): YPL213W
Gene biotype: protein_coding
Description: U2 small nuclear ribonucleoprotein A; Component of U2 snRNP complex; disruption causes reduced U2 snRNP levels; physically interacts with Msl1p; putative homolog of human U2A' snRNP protein; Belongs to the U2 small nuclear ribonucleoprotein A family
Top 10 interactors (score): LUC7 (0.999); YSF3 (0.999); IST3 (0.999); PRP22 (0.999); CWC21 (0.999); SYF1 (0.999); BUD31 (0.999); PRP21 (0.999); ISY1 (0.999); RDS3 (0.999); PRP45 (0.999); PRP11 (0.999); ECM2 (0.999); SME1 (0.999); SNP1 (0.999); PRP42 (0.999); MSL1 (0.999); CLF1 (0.999); SNU56 (0.999); PRP46 (0.999)
Homologues (species, bitscore): SNRPA1 (Homo sapiens, 52.0); Snrpa1 (Mus musculus, 52.0); snrpa1 (Danio rerio, 58.5); lrrc9 (Xenopus tropicalis, 55.5); U2A (Drosophila melanogaster, 55.8); mog-2 (Caenorhabditis elegans, 63.2); U2A (Arabidopsis thaliana, 63.5)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005310.1:128486-129202:+ | gene-YPL213W_AKU4011 | rna-NM_001184027.1_AKU4011 | cds-NP_015111.1_AKU4011 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000069.1:334257-334973:+ | gene-YPL213W_BG1 | rna-NM_001184027.1_BG1 | cds-NP_015111.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005518.1:153951-154667:+ | gene-YPL213W_Bruggeman | rna-NM_001184027.1_Bruggeman | cds-NP_015111.1_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005534.1:150559-151275:+ | gene-YPL213W_CAT1 | rna-NM_001184027.1_CAT1 | cds-NP_015111.1_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005374.1:132672-133388:+ | gene-YPL213W_CBS1585 | rna-NM_001184027.1_CBS1585 | cds-NP_015111.1_CBS1585 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005358.1:147095-147811:+ | gene-YPL213W_CBS436 | rna-NM_001184027.1_CBS436 | cds-NP_015111.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005342.1:137475-138191:+ | gene-YPL213W_CBS6412 | rna-NM_001184027.1_CBS6412 | cds-NP_015111.1_CBS6412 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005326.1:128849-129565:+ | gene-YPL213W_CBS6413 | rna-NM_001184027.1_CBS6413 | cds-NP_015111.1_CBS6413 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001537.1:150551-151267:+ | gene-YPL213W_CENPK1137D | rna-NM_001184027.1_CENPK1137D | cds-NP_015111.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005486.1:127585-128301:+ | gene-YPL213W_EthanolRed | rna-NM_001184027.1_EthanolRed | cds-NP_015111.1_EthanolRed | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005550.1:134791-135507:+ | gene-YPL213W_FaliES1 | rna-NM_001184027.1_FaliES1 | cds-NP_015111.1_FaliES1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000069.1:22801-23517:- | gene-YPL213W_JAY291 | rna-NM_001184027.1_JAY291 | cds-NP_015111.1_JAY291 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005422.1:145660-146376:+ | gene-YPL213W_MUCL30387 | rna-NM_001184027.1_MUCL30387 | cds-NP_015111.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005454.1:143851-144567:+ | gene-YPL213W_MUCL30388 | rna-NM_001184027.1_MUCL30388 | cds-NP_015111.1_MUCL30388 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005294.1:125802-126518:+ | gene-YPL213W_MUCL39482 | rna-NM_001184027.1_MUCL39482 | cds-NP_015111.1_MUCL39482 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005438.1:144685-145401:+ | gene-YPL213W_MUCL42920 | rna-NM_001184027.1_MUCL42920 | cds-NP_015111.1_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011825.1:150597-151313:+ | gene-YPL213W_NCIM3186 | rna-NM_001184027.1_NCIM3186 | cds-NP_015111.1_NCIM3186 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005278.1:132250-132966:+ | gene-YPL213W_NCYC1407 | rna-NM_001184027.1_NCYC1407 | cds-NP_015111.1_NCYC1407 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994155.1:139957-140673:+ | gene-YPL213W_PE2H3 | rna-NM_001184027.1_PE2H3 | cds-NP_015111.1_PE2H3 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999887.1:139600-140316:+ | gene-YPL213W_PE2H4 | rna-NM_001184027.1_PE2H4 | cds-NP_015111.1_PE2H4 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001148.4:150614-151330:+ | gene-YPL213W_S288C | rna-NM_001184027.1_S288C | cds-NP_015111.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000095.1:22851-23567:- | gene-YPL213W_SA1 | rna-NM_001184027.1_SA1 | cds-NP_015111.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005502.1:134572-135288:+ | gene-YPL213W_ThermosaccDry | rna-NM_001184027.1_ThermosaccDry | cds-NP_015111.1_ThermosaccDry | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005470.1:148638-149354:+ | gene-YPL213W_VR1 | rna-NM_001184027.1_VR1 | cds-NP_015111.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000033.1:134102-134818:+ | gene-YPL213W_ZTW1 | rna-NM_001184027.1_ZTW1 | cds-NP_015111.1_ZTW1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047502.1:135691-136407:+ | gene-YPL213W_Sparadoxus | rna-NM_001184027.1_Sparadoxus | cds-NP_015111.1_Sparadoxus | 87.5 | 99.5 | Verified | 1 | 1 | 1 | False | True | False | False | False |