Gene name: LDB7
Reference locus (S288C): YBL006C
Gene biotype: protein_coding
Description: Chromatin structure-remodeling complex protein RSC14; Component of the RSC chromatin remodeling complex; interacts with Rsc3p, Rsc30p, Npl6p, and Htl1p to form a module important for a broad range of RSC functions
Top 10 interactors (score): NPL6 (0.998); HTL1 (0.998); STH1 (0.997); RSC3 (0.997); RTT102 (0.997); RSC8 (0.996); ARP9 (0.996); RSC4 (0.996); RSC58 (0.996); RSC2 (0.996); RSC9 (0.996); RSC30 (0.996); ARP7 (0.994); RSC6 (0.994); SFH1 (0.985); RSC1 (0.977); GON7 (0.692); SNF5 (0.638); BUD22 (0.618); BUD32 (0.572)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005296.1:210647-211189:- | gene-YBL006C_AKU4011 | rna-NM_001178246.1_AKU4011 | cds-NP_009547.2_AKU4011 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000179.1:201013-201555:- | gene-YBL006C_BG1 | rna-NM_001178246.1_BG1 | cds-NP_009547.2_BG1 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005504.1:211350-211892:- | gene-YBL006C_Bruggeman | rna-NM_001178246.1_Bruggeman | cds-NP_009547.2_Bruggeman | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005520.1:213883-214425:- | gene-YBL006C_CAT1 | rna-NM_001178246.1_CAT1 | cds-NP_009547.2_CAT1 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005360.1:202935-203477:- | gene-YBL006C_CBS1585 | rna-NM_001178246.1_CBS1585 | cds-NP_009547.2_CBS1585 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005344.1:211185-211727:- | gene-YBL006C_CBS436 | rna-NM_001178246.1_CBS436 | cds-NP_009547.2_CBS436 | 99.0 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005328.1:301435-301977:- | gene-YBL006C_CBS6412 | rna-NM_001178246.1_CBS6412 | cds-NP_009547.2_CBS6412 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005312.1:208300-208842:- | gene-YBL006C_CBS6413 | rna-NM_001178246.1_CBS6413 | cds-NP_009547.2_CBS6413 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001523.1:210353-210895:- | gene-YBL006C_CENPK1137D | rna-NM_001178246.1_CENPK1137D | cds-NP_009547.2_CENPK1137D | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005472.1:337892-338434:- | gene-YBL006C_EthanolRed | rna-NM_001178246.1_EthanolRed | cds-NP_009547.2_EthanolRed | 98.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005536.1:225493-226035:- | gene-YBL006C_FaliES1 | rna-NM_001178246.1_FaliES1 | cds-NP_009547.2_FaliES1 | 98.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000048.1:71056-71598:+ | gene-YBL006C_JAY291 | rna-NM_001178246.1_JAY291 | cds-NP_009547.2_JAY291 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005408.1:211948-212490:- | gene-YBL006C_MUCL30387 | rna-NM_001178246.1_MUCL30387 | cds-NP_009547.2_MUCL30387 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005440.1:211888-212430:- | gene-YBL006C_MUCL30388 | rna-NM_001178246.1_MUCL30388 | cds-NP_009547.2_MUCL30388 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005280.1:202916-203458:- | gene-YBL006C_MUCL39482 | rna-NM_001178246.1_MUCL39482 | cds-NP_009547.2_MUCL39482 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005424.1:210357-210899:- | gene-YBL006C_MUCL42920 | rna-NM_001178246.1_MUCL42920 | cds-NP_009547.2_MUCL42920 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011811.1:216384-216926:- | gene-YBL006C_NCIM3186 | rna-NM_001178246.1_NCIM3186 | cds-NP_009547.2_NCIM3186 | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005264.1:204091-204633:- | gene-YBL006C_NCYC1407 | rna-NM_001178246.1_NCYC1407 | cds-NP_009547.2_NCYC1407 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994141.1:216260-216802:- | gene-YBL006C_PE2H3 | rna-NM_001178246.1_PE2H3 | cds-NP_009547.2_PE2H3 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999873.1:213910-214452:- | gene-YBL006C_PE2H4 | rna-NM_001178246.1_PE2H4 | cds-NP_009547.2_PE2H4 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001134.8:216587-217129:- | gene-YBL006C_S288C | rna-NM_001178246.1_S288C | cds-NP_009547.2_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000037.1:79728-80270:+ | gene-YBL006C_SA1 | rna-NM_001178246.1_SA1 | cds-NP_009547.2_SA1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005488.1:225448-225990:- | gene-YBL006C_ThermosaccDry | rna-NM_001178246.1_ThermosaccDry | cds-NP_009547.2_ThermosaccDry | 98.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005456.1:207600-208142:- | gene-YBL006C_VR1 | rna-NM_001178246.1_VR1 | cds-NP_009547.2_VR1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000003.1:201682-202224:- | gene-YBL006C_ZTW1 | rna-NM_001178246.1_ZTW1 | cds-NP_009547.2_ZTW1 | 98.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047488.1:237247-237789:- | gene-YBL006C_Sparadoxus | rna-NM_001178246.1_Sparadoxus | cds-NP_009547.2_Sparadoxus | 87.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |