Gene name: LDB18
Reference locus (S288C): YLL049W
Gene biotype: protein_coding
Description: Protein LDB18; Component of the dynactin complex; dynactin is required for dynein activity; null mutant exhibits defects in nuclear migration and spindle orientation and has reduced affinity for alcian blue dye; has homology to mammalian dynactin subunit p24
Top 10 interactors (score): JNM1 (0.998); NIP100 (0.997); ARP1 (0.975); ARP10 (0.971); DYN3 (0.897); PAC11 (0.875); DYN1 (0.857); KAR9 (0.846); NUM1 (0.818); NDL1 (0.791); PAC1 (0.754); YLL054C (0.748); YDR149C (0.744); KIP2 (0.71); TMS1 (0.7); YLL053C (0.69); SNA2 (0.67); YKE2 (0.628); CNL1 (0.62); KXD1 (0.617)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005306.1:27832-28371:+ | gene-YLL049W_AKU4011 | rna-NM_001181869.1_AKU4011 | cds-NP_013051.1_AKU4011 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000204.1:39-578:- | gene-YLL049W_BG1 | rna-NM_001181869.1_BG1 | cds-NP_013051.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005514.1:37195-37734:+ | gene-YLL049W_Bruggeman | rna-NM_001181869.1_Bruggeman | cds-NP_013051.1_Bruggeman | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005530.1:38677-39216:+ | gene-YLL049W_CAT1 | rna-NM_001181869.1_CAT1 | cds-NP_013051.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005370.1:35731-36270:+ | gene-YLL049W_CBS1585 | rna-NM_001181869.1_CBS1585 | cds-NP_013051.1_CBS1585 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005354.1:25756-26295:+ | gene-YLL049W_CBS436 | rna-NM_001181869.1_CBS436 | cds-NP_013051.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005338.1:35777-36316:+ | gene-YLL049W_CBS6412 | rna-NM_001181869.1_CBS6412 | cds-NP_013051.1_CBS6412 | 99.2 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005322.1:35540-36079:+ | gene-YLL049W_CBS6413 | rna-NM_001181869.1_CBS6413 | cds-NP_013051.1_CBS6413 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001533.1:25617-26156:+ | gene-YLL049W_CENPK1137D | rna-NM_001181869.1_CENPK1137D | cds-NP_013051.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005482.1:28645-29171:+ | gene-YLL049W_EthanolRed | rna-NM_001181869.1_EthanolRed | cds-NP_013051.1_EthanolRed | 80.9 | 91.8 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005546.1:27734-28273:+ | gene-YLL049W_FaliES1 | rna-NM_001181869.1_FaliES1 | cds-NP_013051.1_FaliES1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000073.1:26879-27418:+ | gene-YLL049W_JAY291 | rna-NM_001181869.1_JAY291 | cds-NP_013051.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005418.1:35503-36042:+ | gene-YLL049W_MUCL30387 | rna-NM_001181869.1_MUCL30387 | cds-NP_013051.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005450.1:39507-40046:+ | gene-YLL049W_MUCL30388 | rna-NM_001181869.1_MUCL30388 | cds-NP_013051.1_MUCL30388 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005290.1:35733-36272:+ | gene-YLL049W_MUCL39482 | rna-NM_001181869.1_MUCL39482 | cds-NP_013051.1_MUCL39482 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005434.1:36063-36602:+ | gene-YLL049W_MUCL42920 | rna-NM_001181869.1_MUCL42920 | cds-NP_013051.1_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011821.1:40640-41179:+ | gene-YLL049W_NCIM3186 | rna-NM_001181869.1_NCIM3186 | cds-NP_013051.1_NCIM3186 | 98.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005274.1:27573-28112:+ | gene-YLL049W_NCYC1407 | rna-NM_001181869.1_NCYC1407 | cds-NP_013051.1_NCYC1407 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994151.1:34285-34824:+ | gene-YLL049W_PE2H3 | rna-NM_001181869.1_PE2H3 | cds-NP_013051.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999883.1:34088-34627:+ | gene-YLL049W_PE2H4 | rna-NM_001181869.1_PE2H4 | cds-NP_013051.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001144.5:40666-41205:+ | gene-YLL049W_S288C | rna-NM_001181869.1_S288C | cds-NP_013051.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000047.1:33918-34457:+ | gene-YLL049W_SA1 | rna-NM_001181869.1_SA1 | cds-NP_013051.1_SA1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005498.1:28269-28808:+ | gene-YLL049W_ThermosaccDry | rna-NM_001181869.1_ThermosaccDry | cds-NP_013051.1_ThermosaccDry | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005466.1:41854-42393:+ | gene-YLL049W_VR1 | rna-NM_001181869.1_VR1 | cds-NP_013051.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000023.1:27595-28134:+ | gene-YLL049W_ZTW1 | rna-NM_001181869.1_ZTW1 | cds-NP_013051.1_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047498.1:35973-36512:+ | gene-YLL049W_Sparadoxus | rna-NM_001181869.1_Sparadoxus | cds-NP_013051.1_Sparadoxus | 84.0 | 99.2 | Verified | 1 | 1 | 1 | False | True | False | False | False |