Gene name: LDB17
Reference locus (S288C): YDL146W
Gene biotype: protein_coding
Description: Protein involved in the regulation of endocytosis; transiently recruited to actin cortical patches in a SLA1-dependent manner after late coat component assembly; GFP-fusion protein localizes to the periphery, cytoplasm, bud, and bud neck; Belongs to the LDB17 family
Top 10 interactors (score): ARP2 (0.983); ARP3 (0.977); ARC35 (0.971); ARC19 (0.968); ARC18 (0.968); BZZ1 (0.967); ARC15 (0.967); YSC84 (0.89); LAS17 (0.811); SLA1 (0.81); VRP1 (0.8); YHL017W (0.76); CRN1 (0.759); RRT16 (0.717); ARC40 (0.713); HYP2 (0.706); AIM7 (0.699); AIP1 (0.696); ARL3 (0.681); YAP1801 (0.675)
Homologues (species, bitscore): nckipsd (Xenopus tropicalis, 50.1); CG2258 (Drosophila melanogaster, 55.5)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:177167-178642:+ | gene-YDL146W_AKU4011 | rna-NM_001180206.1_AKU4011 | cds-NP_010135.1_AKU4011 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000102.1:371138-372613:- | gene-YDL146W_BG1 | rna-NM_001180206.1_BG1 | cds-NP_010135.1_BG1 | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:193210-194685:+ | gene-YDL146W_Bruggeman | rna-NM_001180206.1_Bruggeman | cds-NP_010135.1_Bruggeman | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:191530-193005:+ | gene-YDL146W_CAT1 | rna-NM_001180206.1_CAT1 | cds-NP_010135.1_CAT1 | 98.7 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | False | True |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:175198-176673:+ | gene-YDL146W_CBS1585 | rna-NM_001180206.1_CBS1585 | cds-NP_010135.1_CBS1585 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:192135-193610:+ | gene-YDL146W_CBS436 | rna-NM_001180206.1_CBS436 | cds-NP_010135.1_CBS436 | 98.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:174451-175926:+ | gene-YDL146W_CBS6412 | rna-NM_001180206.1_CBS6412 | cds-NP_010135.1_CBS6412 | 99.1 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:193636-195111:+ | gene-YDL146W_CBS6413 | rna-NM_001180206.1_CBS6413 | cds-NP_010135.1_CBS6413 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:191402-192877:+ | gene-YDL146W_CENPK1137D | rna-NM_001180206.1_CENPK1137D | cds-NP_010135.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:188406-189881:+ | gene-YDL146W_EthanolRed | rna-NM_001180206.1_EthanolRed | cds-NP_010135.1_EthanolRed | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:193938-195413:+ | gene-YDL146W_FaliES1 | rna-NM_001180206.1_FaliES1 | cds-NP_010135.1_FaliES1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000032.1:24139-25614:- | gene-YDL146W_JAY291 | rna-NM_001180206.1_JAY291 | cds-NP_010135.1_JAY291 | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:192323-193798:+ | gene-YDL146W_MUCL30387 | rna-NM_001180206.1_MUCL30387 | cds-NP_010135.1_MUCL30387 | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:183184-184659:+ | gene-YDL146W_MUCL30388 | rna-NM_001180206.1_MUCL30388 | cds-NP_010135.1_MUCL30388 | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:176353-177828:+ | gene-YDL146W_MUCL39482 | rna-NM_001180206.1_MUCL39482 | cds-NP_010135.1_MUCL39482 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | MBVV01000205.1:24092-25567:- | gene-YDL146W_MUCL42920 | rna-NM_001180206.1_MUCL42920 | cds-NP_010135.1_MUCL42920 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:192673-194148:+ | gene-YDL146W_NCIM3186 | rna-NM_001180206.1_NCIM3186 | cds-NP_010135.1_NCIM3186 | 98.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:176289-177761:+ | gene-YDL146W_NCYC1407 | rna-NM_001180206.1_NCYC1407 | cds-NP_010135.1_NCYC1407 | 98.9 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:183524-184999:+ | gene-YDL146W_PE2H3 | rna-NM_001180206.1_PE2H3 | cds-NP_010135.1_PE2H3 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:183528-185003:+ | gene-YDL146W_PE2H4 | rna-NM_001180206.1_PE2H4 | cds-NP_010135.1_PE2H4 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:192750-194225:+ | gene-YDL146W_S288C | rna-NM_001180206.1_S288C | cds-NP_010135.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000043.1:58306-59781:+ | gene-YDL146W_SA1 | rna-NM_001180206.1_SA1 | cds-NP_010135.1_SA1 | 98.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:193699-195174:+ | gene-YDL146W_ThermosaccDry | rna-NM_001180206.1_ThermosaccDry | cds-NP_010135.1_ThermosaccDry | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:194292-195767:+ | gene-YDL146W_VR1 | rna-NM_001180206.1_VR1 | cds-NP_010135.1_VR1 | 98.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000006.1:191826-193301:+ | gene-YDL146W_ZTW1 | rna-NM_001180206.1_ZTW1 | cds-NP_010135.1_ZTW1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:193948-195423:+ | gene-YDL146W_Sparadoxus | rna-NM_001180206.1_Sparadoxus | cds-NP_010135.1_Sparadoxus | 89.6 | 99.5 | Verified | 1 | 1 | 1 | False | True | False | False | False |