Gene name: LDB16
Reference locus (S288C): YCL005W
Gene biotype: protein_coding
Description: Protein involved in lipid droplet (LD) assembly; forms a complex with Sei1p at ER-LD contact sites, stabilizing contact sites; ensures that LDs bud from the ER towards the cytosolic side of the membrane; null mutants have decreased net negative cell surface charge and localized accumulation of phosphatidic acid (PA) marker proteins; GFP-fusion protein expression is induced in response to MMS; null mutant can be complemented by the human seipin, BSCL2
Top 10 interactors (score): SEI1 (0.985); PET10 (0.886); DGA1 (0.828); SCS3 (0.778); YFT2 (0.76); OSW5 (0.653); YEH1 (0.633); YNL320W (0.616); PCT1 (0.615); TGL3 (0.614); LRO1 (0.613); PEX30 (0.599); PAH1 (0.571); ARE2 (0.571); LDB18 (0.571); LPP1 (0.563); LDB17 (0.555); ICE2 (0.531); DPP1 (0.525); SPS4 (0.499)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005297.1:102738-103508:+ | gene-YCL005W_AKU4011 | rna-NM_001178654.1_AKU4011 | cds-NP_009922.2_AKU4011 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000178.1:42525-43295:- | gene-YCL005W_BG1 | rna-NM_001178654.1_BG1 | cds-NP_009922.2_BG1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005505.1:97323-98093:+ | gene-YCL005W_Bruggeman | rna-NM_001178654.1_Bruggeman | cds-NP_009922.2_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005521.1:102473-103243:+ | gene-YCL005W_CAT1 | rna-NM_001178654.1_CAT1 | cds-NP_009922.2_CAT1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005361.1:103388-104158:+ | gene-YCL005W_CBS1585 | rna-NM_001178654.1_CBS1585 | cds-NP_009922.2_CBS1585 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005345.1:108304-109074:+ | gene-YCL005W_CBS436 | rna-NM_001178654.1_CBS436 | cds-NP_009922.2_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005329.1:90847-91617:+ | gene-YCL005W_CBS6412 | rna-NM_001178654.1_CBS6412 | cds-NP_009922.2_CBS6412 | 99.2 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005313.1:102695-103465:+ | gene-YCL005W_CBS6413 | rna-NM_001178654.1_CBS6413 | cds-NP_009922.2_CBS6413 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001524.1:107496-108266:+ | gene-YCL005W_CENPK1137D | rna-NM_001178654.1_CENPK1137D | cds-NP_009922.2_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005473.1:100757-101527:+ | gene-YCL005W_EthanolRed | rna-NM_001178654.1_EthanolRed | cds-NP_009922.2_EthanolRed | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005537.1:103050-103820:+ | gene-YCL005W_FaliES1 | rna-NM_001178654.1_FaliES1 | cds-NP_009922.2_FaliES1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000126.1:17219-17989:+ | gene-YCL005W_JAY291 | rna-NM_001178654.1_JAY291 | cds-NP_009922.2_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005409.1:95758-96528:+ | gene-YCL005W_MUCL30387 | rna-NM_001178654.1_MUCL30387 | cds-NP_009922.2_MUCL30387 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005441.1:95314-96084:+ | gene-YCL005W_MUCL30388 | rna-NM_001178654.1_MUCL30388 | cds-NP_009922.2_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005281.1:103805-104575:+ | gene-YCL005W_MUCL39482 | rna-NM_001178654.1_MUCL39482 | cds-NP_009922.2_MUCL39482 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005425.1:99037-99807:+ | gene-YCL005W_MUCL42920 | rna-NM_001178654.1_MUCL42920 | cds-NP_009922.2_MUCL42920 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011812.1:107653-108423:+ | gene-YCL005W_NCIM3186 | rna-NM_001178654.1_NCIM3186 | cds-NP_009922.2_NCIM3186 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005265.1:104287-105057:+ | gene-YCL005W_NCYC1407 | rna-NM_001178654.1_NCYC1407 | cds-NP_009922.2_NCYC1407 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994142.1:108456-109226:+ | gene-YCL005W_PE2H3 | rna-NM_001178654.1_PE2H3 | cds-NP_009922.2_PE2H3 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999874.1:108414-109184:+ | gene-YCL005W_PE2H4 | rna-NM_001178654.1_PE2H4 | cds-NP_009922.2_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001135.5:108021-108791:+ | gene-YCL005W_S288C | rna-NM_001178654.1_S288C | cds-NP_009922.2_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000073.1:42543-43313:- | gene-YCL005W_SA1 | rna-NM_001178654.1_SA1 | cds-NP_009922.2_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005489.1:103623-104393:+ | gene-YCL005W_ThermosaccDry | rna-NM_001178654.1_ThermosaccDry | cds-NP_009922.2_ThermosaccDry | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005457.1:114263-115033:+ | gene-YCL005W_VR1 | rna-NM_001178654.1_VR1 | cds-NP_009922.2_VR1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000004.1:102560-103330:+ | gene-YCL005W_ZTW1 | rna-NM_001178654.1_ZTW1 | cds-NP_009922.2_ZTW1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047489.1:132798-133568:+ | gene-YCL005W_Sparadoxus | rna-NM_001178654.1_Sparadoxus | cds-NP_009922.2_Sparadoxus | 90.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |