Gene name: LCP5
Reference locus (S288C): YER127W
Gene biotype: protein_coding
Description: U3 small nucleolar ribonucleoprotein protein LCP5; Essential protein involved in maturation of 18S rRNA; depletion leads to inhibited pre-rRNA processing and reduced polysome levels; localizes primarily to the nucleolus
Top 10 interactors (score): UTP21 (0.999); UTP10 (0.999); UTP14 (0.999); NOC4 (0.999); CKA1 (0.999); KRE33 (0.999); NAN1 (0.999); SOF1 (0.999); UTP5 (0.999); FAL1 (0.999); UTP13 (0.999); NOP58 (0.999); UTP25 (0.999); IMP4 (0.999); UTP18 (0.999); ENP2 (0.999); PWP2 (0.999); NOP56 (0.999); UTP15 (0.999); RRP9 (0.999)
Homologues (species, bitscore): ngdn (Xenopus tropicalis, 52.8); CG11030 (Drosophila melanogaster, 54.7); lpd-2 (Caenorhabditis elegans, 51.6)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005299.1:408357-409430:+ | gene-YER127W_AKU4011 | rna-NM_001179017.1_AKU4011 | cds-NP_011053.1_AKU4011 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000011.1:16224-17297:- | gene-YER127W_BG1 | rna-NM_001179017.1_BG1 | cds-NP_011053.1_BG1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005507.1:418823-419896:+ | gene-YER127W_Bruggeman | rna-NM_001179017.1_Bruggeman | cds-NP_011053.1_Bruggeman | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005523.1:414064-415137:+ | gene-YER127W_CAT1 | rna-NM_001179017.1_CAT1 | cds-NP_011053.1_CAT1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005363.1:407752-408825:+ | gene-YER127W_CBS1585 | rna-NM_001179017.1_CBS1585 | cds-NP_011053.1_CBS1585 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005347.1:410457-411530:+ | gene-YER127W_CBS436 | rna-NM_001179017.1_CBS436 | cds-NP_011053.1_CBS436 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005331.1:406830-407903:+ | gene-YER127W_CBS6412 | rna-NM_001179017.1_CBS6412 | cds-NP_011053.1_CBS6412 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005315.1:413673-414746:+ | gene-YER127W_CBS6413 | rna-NM_001179017.1_CBS6413 | cds-NP_011053.1_CBS6413 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001526.1:412245-413318:+ | gene-YER127W_CENPK1137D | rna-NM_001179017.1_CENPK1137D | cds-NP_011053.1_CENPK1137D | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005475.1:408201-409274:+ | gene-YER127W_EthanolRed | rna-NM_001179017.1_EthanolRed | cds-NP_011053.1_EthanolRed | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005539.1:408682-409755:+ | gene-YER127W_FaliES1 | rna-NM_001179017.1_FaliES1 | cds-NP_011053.1_FaliES1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000028.1:16905-17978:+ | gene-YER127W_JAY291 | rna-NM_001179017.1_JAY291 | cds-NP_011053.1_JAY291 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005411.1:415772-416845:+ | gene-YER127W_MUCL30387 | rna-NM_001179017.1_MUCL30387 | cds-NP_011053.1_MUCL30387 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005443.1:410718-411791:+ | gene-YER127W_MUCL30388 | rna-NM_001179017.1_MUCL30388 | cds-NP_011053.1_MUCL30388 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005283.1:406777-407850:+ | gene-YER127W_MUCL39482 | rna-NM_001179017.1_MUCL39482 | cds-NP_011053.1_MUCL39482 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005427.1:415264-416337:+ | gene-YER127W_MUCL42920 | rna-NM_001179017.1_MUCL42920 | cds-NP_011053.1_MUCL42920 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011814.1:414480-415553:+ | gene-YER127W_NCIM3186 | rna-NM_001179017.1_NCIM3186 | cds-NP_011053.1_NCIM3186 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005267.1:412310-413383:+ | gene-YER127W_NCYC1407 | rna-NM_001179017.1_NCYC1407 | cds-NP_011053.1_NCYC1407 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994144.1:422855-423928:+ | gene-YER127W_PE2H3 | rna-NM_001179017.1_PE2H3 | cds-NP_011053.1_PE2H3 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999876.1:412796-413869:+ | gene-YER127W_PE2H4 | rna-NM_001179017.1_PE2H4 | cds-NP_011053.1_PE2H4 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001137.3:414481-415554:+ | gene-YER127W_S288C | rna-NM_001179017.1_S288C | cds-NP_011053.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000023.1:124081-125154:+ | gene-YER127W_SA1 | rna-NM_001179017.1_SA1 | cds-NP_011053.1_SA1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005491.1:409480-410553:+ | gene-YER127W_ThermosaccDry | rna-NM_001179017.1_ThermosaccDry | cds-NP_011053.1_ThermosaccDry | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005459.1:410532-411605:+ | gene-YER127W_VR1 | rna-NM_001179017.1_VR1 | cds-NP_011053.1_VR1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000009.1:406610-407683:+ | gene-YER127W_ZTW1 | rna-NM_001179017.1_ZTW1 | cds-NP_011053.1_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047491.1:410433-411497:+ | gene-YER127W_Sparadoxus | rna-NM_001179017.1_Sparadoxus | cds-NP_011053.1_Sparadoxus | 90.1 | 99.1 | Verified | 1 | 1 | 1 | False | True | False | False | False |