Gene name: LCD1
Reference locus (S288C): YDR499W
Gene biotype: protein_coding
Description: Essential protein required for the DNA integrity checkpoint pathways; interacts physically with Mec1p; putative homolog of S. pombe Rad26 and human ATRIP; forms nuclear foci upon DNA replication stress
Top 10 interactors (score): MEC1 (0.999); RFA1 (0.989); RAD53 (0.984); CHK1 (0.977); RAD9 (0.967); DNA2 (0.964); MRC1 (0.96); DPB11 (0.944); TEL1 (0.918); SML1 (0.905); DDC1 (0.894); MEC3 (0.893); PML39 (0.858); RFA2 (0.833); URA2 (0.827); EXO1 (0.826); SIR3 (0.822); SGS1 (0.813); CSM3 (0.81); TOF1 (0.81)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:1387816-1390059:+ | gene-YDR499W_AKU4011 | rna-NM_001180807.3_AKU4011 | cds-NP_010787.3_AKU4011 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000073.1:29375-31618:+ | gene-YDR499W_BG1 | rna-NM_001180807.3_BG1 | cds-NP_010787.3_BG1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:1419136-1421379:+ | gene-YDR499W_Bruggeman | rna-NM_001180807.3_Bruggeman | cds-NP_010787.3_Bruggeman | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:1396315-1398558:+ | gene-YDR499W_CAT1 | rna-NM_001180807.3_CAT1 | cds-NP_010787.3_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:1382058-1384301:+ | gene-YDR499W_CBS1585 | rna-NM_001180807.3_CBS1585 | cds-NP_010787.3_CBS1585 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:1401412-1403655:+ | gene-YDR499W_CBS436 | rna-NM_001180807.3_CBS436 | cds-NP_010787.3_CBS436 | 99.2 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:1377700-1379943:+ | gene-YDR499W_CBS6412 | rna-NM_001180807.3_CBS6412 | cds-NP_010787.3_CBS6412 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:1400715-1402958:+ | gene-YDR499W_CBS6413 | rna-NM_001180807.3_CBS6413 | cds-NP_010787.3_CBS6413 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:1446524-1448767:+ | gene-YDR499W_CENPK1137D | rna-NM_001180807.3_CENPK1137D | cds-NP_010787.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:1391105-1393348:+ | gene-YDR499W_EthanolRed | rna-NM_001180807.3_EthanolRed | cds-NP_010787.3_EthanolRed | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:1394658-1396901:+ | gene-YDR499W_FaliES1 | rna-NM_001180807.3_FaliES1 | cds-NP_010787.3_FaliES1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000026.1:92909-95152:+ | gene-YDR499W_JAY291 | rna-NM_001180807.3_JAY291 | cds-NP_010787.3_JAY291 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:1401661-1403904:+ | gene-YDR499W_MUCL30387 | rna-NM_001180807.3_MUCL30387 | cds-NP_010787.3_MUCL30387 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:1383654-1385897:+ | gene-YDR499W_MUCL30388 | rna-NM_001180807.3_MUCL30388 | cds-NP_010787.3_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:1373543-1375786:+ | gene-YDR499W_MUCL39482 | rna-NM_001180807.3_MUCL39482 | cds-NP_010787.3_MUCL39482 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:1316334-1318577:+ | gene-YDR499W_MUCL42920 | rna-NM_001180807.3_MUCL42920 | cds-NP_010787.3_MUCL42920 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:1447753-1449996:+ | gene-YDR499W_NCIM3186 | rna-NM_001180807.3_NCIM3186 | cds-NP_010787.3_NCIM3186 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:1387329-1389572:+ | gene-YDR499W_NCYC1407 | rna-NM_001180807.3_NCYC1407 | cds-NP_010787.3_NCYC1407 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:1398176-1400419:+ | gene-YDR499W_PE2H3 | rna-NM_001180807.3_PE2H3 | cds-NP_010787.3_PE2H3 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:1403751-1405994:+ | gene-YDR499W_PE2H4 | rna-NM_001180807.3_PE2H4 | cds-NP_010787.3_PE2H4 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:1447830-1450073:+ | gene-YDR499W_S288C | rna-NM_001180807.3_S288C | cds-NP_010787.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000004.1:167060-169303:- | gene-YDR499W_SA1 | rna-NM_001180807.3_SA1 | cds-NP_010787.3_SA1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:1398880-1401123:+ | gene-YDR499W_ThermosaccDry | rna-NM_001180807.3_ThermosaccDry | cds-NP_010787.3_ThermosaccDry | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:1414621-1416864:+ | gene-YDR499W_VR1 | rna-NM_001180807.3_VR1 | cds-NP_010787.3_VR1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000008.1:441549-443792:+ | gene-YDR499W_ZTW1 | rna-NM_001180807.3_ZTW1 | cds-NP_010787.3_ZTW1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:1401684-1403924:+ | gene-YDR499W_Sparadoxus | rna-NM_001180807.3_Sparadoxus | cds-NP_010787.3_Sparadoxus | 89.5 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |