Gene name: LCB5
Reference locus (S288C): YLR260W
Gene biotype: protein_coding
Description: Minor sphingoid long-chain base kinase; possibly involved in synthesis of long-chain base phosphates, which function as signaling molecules; LCB5 has a paralog, LCB4, that arose from the whole genome duplication
Top 10 interactors (score): YSR3 (0.995); LCB3 (0.994); DPL1 (0.993); LAG1 (0.985); YPC1 (0.985); LAC1 (0.985); YDC1 (0.98); LCB4 (0.957); SUR2 (0.949); TSC10 (0.923); PKC1 (0.906); LCB1 (0.906); LCB2 (0.838); ISC1 (0.798); CSG2 (0.721); SCS7 (0.692); TVP23 (0.671); PHS1 (0.665); ERG13 (0.66); EST2 (0.644)
Homologues (species, bitscore): SPHK1 (Homo sapiens, 129.4); Sphk1 (Mus musculus, 122.5); sphk2 (Danio rerio, 112.1); sphk1 (Xenopus tropicalis, 137.1); Sk2 (Drosophila melanogaster, 133.3); sphk-1 (Caenorhabditis elegans, 83.2); SPHK1 (Arabidopsis thaliana, 132.1)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005306.1:614133-616169:+ | gene-YLR260W_AKU4011 | rna-NM_001182147.1_AKU4011 | cds-NP_013361.1_AKU4011 | 98.4 | 98.6 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000170.1:115722-117758:- | gene-YLR260W_BG1 | rna-NM_001182147.1_BG1 | cds-NP_013361.1_BG1 | 98.4 | 98.6 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005514.1:648378-650413:+ | gene-YLR260W_Bruggeman | rna-NM_001182147.1_Bruggeman | cds-NP_013361.1_Bruggeman | 98.3 | 98.6 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005530.1:647523-649586:+ | gene-YLR260W_CAT1 | rna-NM_001182147.1_CAT1 | cds-NP_013361.1_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005370.1:649628-651664:+ | gene-YLR260W_CBS1585 | rna-NM_001182147.1_CBS1585 | cds-NP_013361.1_CBS1585 | 98.4 | 98.6 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005354.1:633852-635888:+ | gene-YLR260W_CBS436 | rna-NM_001182147.1_CBS436 | cds-NP_013361.1_CBS436 | 98.4 | 98.6 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005338.1:612603-614639:+ | gene-YLR260W_CBS6412 | rna-NM_001182147.1_CBS6412 | cds-NP_013361.1_CBS6412 | 98.4 | 98.6 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005322.1:649924-651960:+ | gene-YLR260W_CBS6413 | rna-NM_001182147.1_CBS6413 | cds-NP_013361.1_CBS6413 | 98.3 | 98.6 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001533.1:650453-652489:+ | gene-YLR260W_CENPK1137D | rna-NM_001182147.1_CENPK1137D | cds-NP_013361.1_CENPK1137D | 98.4 | 98.6 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005482.1:608234-610297:+ | gene-YLR260W_EthanolRed | rna-NM_001182147.1_EthanolRed | cds-NP_013361.1_EthanolRed | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005546.1:637071-639134:+ | gene-YLR260W_FaliES1 | rna-NM_001182147.1_FaliES1 | cds-NP_013361.1_FaliES1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000136.1:20220-22282:- | gene-YLR260W_JAY291 | rna-NM_001182147.1_JAY291 | cds-NP_013361.1_JAY291 | 99.7 | 99.9 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005418.1:649238-651273:+ | gene-YLR260W_MUCL30387 | rna-NM_001182147.1_MUCL30387 | cds-NP_013361.1_MUCL30387 | 98.3 | 98.6 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005450.1:654002-656038:+ | gene-YLR260W_MUCL30388 | rna-NM_001182147.1_MUCL30388 | cds-NP_013361.1_MUCL30388 | 98.3 | 98.6 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005290.1:650609-652645:+ | gene-YLR260W_MUCL39482 | rna-NM_001182147.1_MUCL39482 | cds-NP_013361.1_MUCL39482 | 98.4 | 98.6 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005434.1:645381-647417:+ | gene-YLR260W_MUCL42920 | rna-NM_001182147.1_MUCL42920 | cds-NP_013361.1_MUCL42920 | 98.4 | 98.6 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011821.1:665818-667881:+ | gene-YLR260W_NCIM3186 | rna-NM_001182147.1_NCIM3186 | cds-NP_013361.1_NCIM3186 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005274.1:637596-639632:+ | gene-YLR260W_NCYC1407 | rna-NM_001182147.1_NCYC1407 | cds-NP_013361.1_NCYC1407 | 98.4 | 98.6 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994151.1:641329-643392:+ | gene-YLR260W_PE2H3 | rna-NM_001182147.1_PE2H3 | cds-NP_013361.1_PE2H3 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999883.1:641073-643136:+ | gene-YLR260W_PE2H4 | rna-NM_001182147.1_PE2H4 | cds-NP_013361.1_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001144.5:665844-667907:+ | gene-YLR260W_S288C | rna-NM_001182147.1_S288C | cds-NP_013361.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000013.1:20465-22528:- | gene-YLR260W_SA1 | rna-NM_001182147.1_SA1 | cds-NP_013361.1_SA1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005498.1:639079-641142:+ | gene-YLR260W_ThermosaccDry | rna-NM_001182147.1_ThermosaccDry | cds-NP_013361.1_ThermosaccDry | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005466.1:650443-652479:+ | gene-YLR260W_VR1 | rna-NM_001182147.1_VR1 | cds-NP_013361.1_VR1 | 98.4 | 98.6 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000024.1:163391-165454:+ | gene-YLR260W_ZTW1 | rna-NM_001182147.1_ZTW1 | cds-NP_013361.1_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047498.1:624929-626971:+ | gene-YLR260W_Sparadoxus | rna-NM_001182147.1_Sparadoxus | cds-NP_013361.1_Sparadoxus | 88.7 | 98.6 | Verified | 1 | 1 | 1 | False | True | False | False | False |