Gene name: LCB3
Reference locus (S288C): YJL134W
Gene biotype: protein_coding
Description: Long-chain base-1-phosphate phosphatase; specific for dihydrosphingosine-1-phosphate, regulates ceramide and long-chain base phosphates levels, involved in incorporation of exogenous long chain bases in sphingolipids; LCB3 has a paralog, YSR3, that arose from the whole genome duplication
Top 10 interactors (score): DPL1 (0.999); LCB4 (0.997); SUR2 (0.997); LCB5 (0.994); LAG1 (0.987); LAC1 (0.987); YDC1 (0.977); YSR3 (0.954); TSC10 (0.94); LCB2 (0.866); LCB1 (0.855); ELO3 (0.823); SVF1 (0.813); YPC1 (0.786); YOR072W (0.748); LIP1 (0.741); ISC1 (0.695); ORM2 (0.69); CKA2 (0.638); FSH3 (0.615)
Homologues (species, bitscore): SGPP1 (Homo sapiens, 75.5); Sgpp2 (Mus musculus, 76.6); SGPP2 (Danio rerio, 64.3); SGPP2 (Xenopus tropicalis, 73.9); AT3G58490 (Arabidopsis thaliana, 113.2)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005304.1:146482-147711:+ | gene-YJL134W_AKU4011 | rna-NM_001181567.1_AKU4011 | cds-NP_012401.1_AKU4011 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000190.1:466008-467237:- | gene-YJL134W_BG1 | rna-NM_001181567.1_BG1 | cds-NP_012401.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005512.1:158567-159796:+ | gene-YJL134W_Bruggeman | rna-NM_001181567.1_Bruggeman | cds-NP_012401.1_Bruggeman | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005528.1:162355-163584:+ | gene-YJL134W_CAT1 | rna-NM_001181567.1_CAT1 | cds-NP_012401.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005368.1:152116-153345:+ | gene-YJL134W_CBS1585 | rna-NM_001181567.1_CBS1585 | cds-NP_012401.1_CBS1585 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005352.1:176866-178095:+ | gene-YJL134W_CBS436 | rna-NM_001181567.1_CBS436 | cds-NP_012401.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005336.1:148134-149363:+ | gene-YJL134W_CBS6412 | rna-NM_001181567.1_CBS6412 | cds-NP_012401.1_CBS6412 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005320.1:149592-150821:+ | gene-YJL134W_CBS6413 | rna-NM_001181567.1_CBS6413 | cds-NP_012401.1_CBS6413 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001531.1:140657-141886:+ | gene-YJL134W_CENPK1137D | rna-NM_001181567.1_CENPK1137D | cds-NP_012401.1_CENPK1137D | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005480.1:150466-151695:+ | gene-YJL134W_EthanolRed | rna-NM_001181567.1_EthanolRed | cds-NP_012401.1_EthanolRed | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005544.1:156118-157347:+ | gene-YJL134W_FaliES1 | rna-NM_001181567.1_FaliES1 | cds-NP_012401.1_FaliES1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000099.1:37298-38527:+ | gene-YJL134W_JAY291 | rna-NM_001181567.1_JAY291 | cds-NP_012401.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005416.1:160836-162065:+ | gene-YJL134W_MUCL30387 | rna-NM_001181567.1_MUCL30387 | cds-NP_012401.1_MUCL30387 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005448.1:156887-158116:+ | gene-YJL134W_MUCL30388 | rna-NM_001181567.1_MUCL30388 | cds-NP_012401.1_MUCL30388 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005288.1:151064-152293:+ | gene-YJL134W_MUCL39482 | rna-NM_001181567.1_MUCL39482 | cds-NP_012401.1_MUCL39482 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005432.1:156627-157856:+ | gene-YJL134W_MUCL42920 | rna-NM_001181567.1_MUCL42920 | cds-NP_012401.1_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011819.1:158167-159396:+ | gene-YJL134W_NCIM3186 | rna-NM_001181567.1_NCIM3186 | cds-NP_012401.1_NCIM3186 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005272.1:149470-150699:+ | gene-YJL134W_NCYC1407 | rna-NM_001181567.1_NCYC1407 | cds-NP_012401.1_NCYC1407 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994149.1:162275-163504:+ | gene-YJL134W_PE2H3 | rna-NM_001181567.1_PE2H3 | cds-NP_012401.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999881.1:161919-163148:+ | gene-YJL134W_PE2H4 | rna-NM_001181567.1_PE2H4 | cds-NP_012401.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001142.9:158188-159417:+ | gene-YJL134W_S288C | rna-NM_001181567.1_S288C | cds-NP_012401.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000085.1:39755-40984:- | gene-YJL134W_SA1 | rna-NM_001181567.1_SA1 | cds-NP_012401.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005496.1:149309-150538:+ | gene-YJL134W_ThermosaccDry | rna-NM_001181567.1_ThermosaccDry | cds-NP_012401.1_ThermosaccDry | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005464.1:156391-157620:+ | gene-YJL134W_VR1 | rna-NM_001181567.1_VR1 | cds-NP_012401.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000021.1:136602-137831:+ | gene-YJL134W_ZTW1 | rna-NM_001181567.1_ZTW1 | cds-NP_012401.1_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047496.1:161854-163083:+ | gene-YJL134W_Sparadoxus | rna-NM_001181567.1_Sparadoxus | cds-NP_012401.1_Sparadoxus | 91.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |