Gene name: KSH1
Reference locus (S288C): YNL024C-A
Gene biotype: protein_coding
Description: Essential protein suggested to function early in the secretory pathway; inviability is suppressed by overexpression of Golgi protein Tvp23p; SWAT-GFP and mCherry fusion proteins localize to the endoplasmic reticulum and cytosol respectively; ortholog of human Kish
Top 10 interactors (score): CMC4 (0.896); YJL127C-B (0.733); YIL156W-B (0.716); SKG1 (0.675); HST2 (0.674); YKL033W-A (0.673); PTK1 (0.65); ECM9 (0.616); ERI1 (0.612); SLY1 (0.588); YER039C-A (0.577); YSF3 (0.572); RRT8 (0.571); SPO24 (0.564); YJL107C (0.564); YPR089W (0.561); PIR5 (0.526); HSK3 (0.513); TPH3 (0.499); HVG1 (0.492)
Homologues (species, bitscore): TMEM167A (Homo sapiens, 91.3); Tmem167 (Mus musculus, 90.5); tmem167a (Danio rerio, 52.0); tmem167a (Xenopus tropicalis, 87.0); ksh (Drosophila melanogaster, 87.0); AT5G20165 (Arabidopsis thaliana, 50.8)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005308.1:569061-569279:- | gene-YNL024C-A_AKU4011 | rna-NM_001184619.3_AKU4011 | cds-NP_878158.3_AKU4011 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000155.1:470864-471082:+ | gene-YNL024C-A_BG1 | rna-NM_001184619.3_BG1 | cds-NP_878158.3_BG1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005516.1:586482-586700:- | gene-YNL024C-A_Bruggeman | rna-NM_001184619.3_Bruggeman | cds-NP_878158.3_Bruggeman | 99.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005532.1:621931-622149:- | gene-YNL024C-A_CAT1 | rna-NM_001184619.3_CAT1 | cds-NP_878158.3_CAT1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005372.1:574745-574963:- | gene-YNL024C-A_CBS1585 | rna-NM_001184619.3_CBS1585 | cds-NP_878158.3_CBS1585 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005356.1:637156-637374:- | gene-YNL024C-A_CBS436 | rna-NM_001184619.3_CBS436 | cds-NP_878158.3_CBS436 | 99.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005340.1:564578-564796:- | gene-YNL024C-A_CBS6412 | rna-NM_001184619.3_CBS6412 | cds-NP_878158.3_CBS6412 | 99.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005324.1:565919-566137:- | gene-YNL024C-A_CBS6413 | rna-NM_001184619.3_CBS6413 | cds-NP_878158.3_CBS6413 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001535.1:580209-580427:- | gene-YNL024C-A_CENPK1137D | rna-NM_001184619.3_CENPK1137D | cds-NP_878158.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005484.1:571147-571365:- | gene-YNL024C-A_EthanolRed | rna-NM_001184619.3_EthanolRed | cds-NP_878158.3_EthanolRed | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005548.1:562171-562389:- | gene-YNL024C-A_FaliES1 | rna-NM_001184619.3_FaliES1 | cds-NP_878158.3_FaliES1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000387.1:11445-11663:+ | gene-YNL024C-A_JAY291 | rna-NM_001184619.3_JAY291 | cds-NP_878158.3_JAY291 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005420.1:582364-582582:- | gene-YNL024C-A_MUCL30387 | rna-NM_001184619.3_MUCL30387 | cds-NP_878158.3_MUCL30387 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005452.1:625158-625376:- | gene-YNL024C-A_MUCL30388 | rna-NM_001184619.3_MUCL30388 | cds-NP_878158.3_MUCL30388 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005292.1:566340-566558:- | gene-YNL024C-A_MUCL39482 | rna-NM_001184619.3_MUCL39482 | cds-NP_878158.3_MUCL39482 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005436.1:569899-570117:- | gene-YNL024C-A_MUCL42920 | rna-NM_001184619.3_MUCL42920 | cds-NP_878158.3_MUCL42920 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011823.1:586571-586789:- | gene-YNL024C-A_NCIM3186 | rna-NM_001184619.3_NCIM3186 | cds-NP_878158.3_NCIM3186 | 98.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005276.1:568545-568763:- | gene-YNL024C-A_NCYC1407 | rna-NM_001184619.3_NCYC1407 | cds-NP_878158.3_NCYC1407 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994153.1:571069-571287:- | gene-YNL024C-A_PE2H3 | rna-NM_001184619.3_PE2H3 | cds-NP_878158.3_PE2H3 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999885.1:572387-572605:- | gene-YNL024C-A_PE2H4 | rna-NM_001184619.3_PE2H4 | cds-NP_878158.3_PE2H4 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001146.8:586602-586820:- | gene-YNL024C-A_S288C | rna-NM_001184619.3_S288C | cds-NP_878158.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000109.1:12628-12846:- | gene-YNL024C-A_SA1 | rna-NM_001184619.3_SA1 | cds-NP_878158.3_SA1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005500.1:562758-562976:- | gene-YNL024C-A_ThermosaccDry | rna-NM_001184619.3_ThermosaccDry | cds-NP_878158.3_ThermosaccDry | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005468.1:579774-579992:+ | gene-YNL024C-A_VR1 | rna-NM_001184619.3_VR1 | cds-NP_878158.3_VR1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000030.1:470464-470682:+ | gene-YNL024C-A_ZTW1 | rna-NM_001184619.3_ZTW1 | cds-NP_878158.3_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047500.1:577845-578063:- | gene-YNL024C-A_Sparadoxus | rna-NM_001184619.3_Sparadoxus | cds-NP_878158.3_Sparadoxus | 96.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |