Gene name: KRR1
Reference locus (S288C): YCL059C
Gene biotype: protein_coding
Description: KRR1 small subunit processome component; Nucleolar protein required for rRNA synthesis and ribosomal assembly; required for the synthesis of 18S rRNA and for the assembly of 40S ribosomal subunit; essential gene; Belongs to the KRR1 family
Top 10 interactors (score): SAS10 (0.999); NOC4 (0.999); UTP14 (0.999); UTP23 (0.999); UTP10 (0.999); UTP7 (0.999); NOP14 (0.999); SOF1 (0.999); UTP22 (0.999); MPP10 (0.999); KRE33 (0.999); EMG1 (0.999); POL5 (0.999); UTP21 (0.999); UTP20 (0.999); RRP7 (0.999); CBF5 (0.999); BUD21 (0.999); FCF1 (0.999); ECM16 (0.999)
Homologues (species, bitscore): KRR1 (Homo sapiens, 372.5); Krr1 (Mus musculus, 375.6); krr1 (Danio rerio, 365.9); krr1 (Xenopus tropicalis, 378.6); dbe (Drosophila melanogaster, 371.3); C05C8.2 (Caenorhabditis elegans, 309.3); AT5G08420 (Arabidopsis thaliana, 392.9)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005297.1:23722-24672:- | gene-YCL059C_AKU4011 | rna-NM_001178703.1_AKU4011 | cds-NP_009872.1_AKU4011 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000090.1:8636-9586:- | gene-YCL059C_BG1 | rna-NM_001178703.1_BG1 | cds-NP_009872.1_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005505.1:11137-12087:- | gene-YCL059C_Bruggeman | rna-NM_001178703.1_Bruggeman | cds-NP_009872.1_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005521.1:23607-24557:- | gene-YCL059C_CAT1 | rna-NM_001178703.1_CAT1 | cds-NP_009872.1_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005361.1:24407-25357:- | gene-YCL059C_CBS1585 | rna-NM_001178703.1_CBS1585 | cds-NP_009872.1_CBS1585 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005345.1:22953-23903:- | gene-YCL059C_CBS436 | rna-NM_001178703.1_CBS436 | cds-NP_009872.1_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005329.1:12163-13113:- | gene-YCL059C_CBS6412 | rna-NM_001178703.1_CBS6412 | cds-NP_009872.1_CBS6412 | 99.4 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | False | True |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005313.1:23179-24129:- | gene-YCL059C_CBS6413 | rna-NM_001178703.1_CBS6413 | cds-NP_009872.1_CBS6413 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001524.1:22024-22974:- | gene-YCL059C_CENPK1137D | rna-NM_001178703.1_CENPK1137D | cds-NP_009872.1_CENPK1137D | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005473.1:21955-22905:- | gene-YCL059C_EthanolRed | rna-NM_001178703.1_EthanolRed | cds-NP_009872.1_EthanolRed | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005537.1:22717-23667:- | gene-YCL059C_FaliES1 | rna-NM_001178703.1_FaliES1 | cds-NP_009872.1_FaliES1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000225.1:60668-61618:+ | gene-YCL059C_JAY291 | rna-NM_001178703.1_JAY291 | cds-NP_009872.1_JAY291 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005409.1:10138-11088:- | gene-YCL059C_MUCL30387 | rna-NM_001178703.1_MUCL30387 | cds-NP_009872.1_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005441.1:10434-11384:- | gene-YCL059C_MUCL30388 | rna-NM_001178703.1_MUCL30388 | cds-NP_009872.1_MUCL30388 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005281.1:24791-25741:- | gene-YCL059C_MUCL39482 | rna-NM_001178703.1_MUCL39482 | cds-NP_009872.1_MUCL39482 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005425.1:10713-11663:- | gene-YCL059C_MUCL42920 | rna-NM_001178703.1_MUCL42920 | cds-NP_009872.1_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011812.1:22061-23011:- | gene-YCL059C_NCIM3186 | rna-NM_001178703.1_NCIM3186 | cds-NP_009872.1_NCIM3186 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005265.1:25119-26069:- | gene-YCL059C_NCYC1407 | rna-NM_001178703.1_NCYC1407 | cds-NP_009872.1_NCYC1407 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994142.1:22888-23838:- | gene-YCL059C_PE2H3 | rna-NM_001178703.1_PE2H3 | cds-NP_009872.1_PE2H3 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999874.1:22845-23795:- | gene-YCL059C_PE2H4 | rna-NM_001178703.1_PE2H4 | cds-NP_009872.1_PE2H4 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001135.5:22429-23379:- | gene-YCL059C_S288C | rna-NM_001178703.1_S288C | cds-NP_009872.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000061.1:9580-10530:- | gene-YCL059C_SA1 | rna-NM_001178703.1_SA1 | cds-NP_009872.1_SA1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005489.1:23036-23986:- | gene-YCL059C_ThermosaccDry | rna-NM_001178703.1_ThermosaccDry | cds-NP_009872.1_ThermosaccDry | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005457.1:28323-29273:- | gene-YCL059C_VR1 | rna-NM_001178703.1_VR1 | cds-NP_009872.1_VR1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000004.1:23262-24212:- | gene-YCL059C_ZTW1 | rna-NM_001178703.1_ZTW1 | cds-NP_009872.1_ZTW1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047489.1:52953-53903:- | gene-YCL059C_Sparadoxus | rna-NM_001178703.1_Sparadoxus | cds-NP_009872.1_Sparadoxus | 92.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |