Gene name: KRI1
Reference locus (S288C): YNL308C
Gene biotype: protein_coding
Description: Protein KRI1; Essential nucleolar protein required for 40S ribosome biogenesis; associate with snR30; physically and functionally interacts with Krr1p; Belongs to the KRI1 family
Top 10 interactors (score): UTP21 (0.999); UTP23 (0.999); NOP14 (0.999); TSR1 (0.999); RRP12 (0.999); NOP58 (0.999); ERB1 (0.999); ENP2 (0.999); ROK1 (0.999); MRD1 (0.999); BFR2 (0.999); KRR1 (0.999); RRP5 (0.999); BMS1 (0.999); UTP13 (0.998); IMP4 (0.998); MAK5 (0.998); NOP7 (0.998); DIP2 (0.998); BUD22 (0.998)
Homologues (species, bitscore): KRI1 (Homo sapiens, 123.6); Kri1 (Mus musculus, 115.5); kri1 (Danio rerio, 110.2); kri1 (Xenopus tropicalis, 108.6); CG5645 (Drosophila melanogaster, 87.4); F54C9.9 (Caenorhabditis elegans, 99.8); AT3G24080 (Arabidopsis thaliana, 87.8)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005308.1:47920-49695:- | gene-YNL308C_AKU4011 | rna-NM_001183146.1_AKU4011 | cds-NP_014091.1_AKU4011 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000074.1:40946-42721:+ | gene-YNL308C_BG1 | rna-NM_001183146.1_BG1 | cds-NP_014091.1_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005516.1:57259-59034:- | gene-YNL308C_Bruggeman | rna-NM_001183146.1_Bruggeman | cds-NP_014091.1_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005532.1:59874-61649:- | gene-YNL308C_CAT1 | rna-NM_001183146.1_CAT1 | cds-NP_014091.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005372.1:48252-50027:- | gene-YNL308C_CBS1585 | rna-NM_001183146.1_CBS1585 | cds-NP_014091.1_CBS1585 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005356.1:48744-50519:- | gene-YNL308C_CBS436 | rna-NM_001183146.1_CBS436 | cds-NP_014091.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005340.1:44911-46686:- | gene-YNL308C_CBS6412 | rna-NM_001183146.1_CBS6412 | cds-NP_014091.1_CBS6412 | 99.2 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005324.1:45100-46875:- | gene-YNL308C_CBS6413 | rna-NM_001183146.1_CBS6413 | cds-NP_014091.1_CBS6413 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001535.1:47949-49724:- | gene-YNL308C_CENPK1137D | rna-NM_001183146.1_CENPK1137D | cds-NP_014091.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005484.1:44942-46717:- | gene-YNL308C_EthanolRed | rna-NM_001183146.1_EthanolRed | cds-NP_014091.1_EthanolRed | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005548.1:45841-47616:- | gene-YNL308C_FaliES1 | rna-NM_001183146.1_FaliES1 | cds-NP_014091.1_FaliES1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000390.1:7901-9676:+ | gene-YNL308C_JAY291 | rna-NM_001183146.1_JAY291 | cds-NP_014091.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005420.1:57514-59289:- | gene-YNL308C_MUCL30387 | rna-NM_001183146.1_MUCL30387 | cds-NP_014091.1_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005452.1:50545-52320:- | gene-YNL308C_MUCL30388 | rna-NM_001183146.1_MUCL30388 | cds-NP_014091.1_MUCL30388 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005292.1:45888-47663:- | gene-YNL308C_MUCL39482 | rna-NM_001183146.1_MUCL39482 | cds-NP_014091.1_MUCL39482 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005436.1:47580-49355:- | gene-YNL308C_MUCL42920 | rna-NM_001183146.1_MUCL42920 | cds-NP_014091.1_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011823.1:54091-55866:- | gene-YNL308C_NCIM3186 | rna-NM_001183146.1_NCIM3186 | cds-NP_014091.1_NCIM3186 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005276.1:47220-48995:- | gene-YNL308C_NCYC1407 | rna-NM_001183146.1_NCYC1407 | cds-NP_014091.1_NCYC1407 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994153.1:44422-46197:- | gene-YNL308C_PE2H3 | rna-NM_001183146.1_PE2H3 | cds-NP_014091.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999885.1:43810-45585:- | gene-YNL308C_PE2H4 | rna-NM_001183146.1_PE2H4 | cds-NP_014091.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001146.8:54122-55897:- | gene-YNL308C_S288C | rna-NM_001183146.1_S288C | cds-NP_014091.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000052.1:41331-43106:+ | gene-YNL308C_SA1 | rna-NM_001183146.1_SA1 | cds-NP_014091.1_SA1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005500.1:46698-48473:- | gene-YNL308C_ThermosaccDry | rna-NM_001183146.1_ThermosaccDry | cds-NP_014091.1_ThermosaccDry | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005468.1:59237-61012:- | gene-YNL308C_VR1 | rna-NM_001183146.1_VR1 | cds-NP_014091.1_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000029.1:37912-39687:- | gene-YNL308C_ZTW1 | rna-NM_001183146.1_ZTW1 | cds-NP_014091.1_ZTW1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047500.1:55951-57735:- | gene-YNL308C_Sparadoxus | rna-NM_001183146.1_Sparadoxus | cds-NP_014091.1_Sparadoxus | 88.1 | 99.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |