Gene name: KRE29
Reference locus (S288C): YER038C
Gene biotype: protein_coding
Description: DNA repair protein KRE29; Subunit of the SMC5-SMC6 complex; this complex is involved in removal of X-shaped DNA structures that arise between sister chromatids during DNA replication and repair; heterozygous mutant shows haploinsufficiency in K1 killer toxin resistance
Top 10 interactors (score): NSE5 (0.998); SMC5 (0.997); SMC6 (0.994); MRPL19 (0.992); NSE3 (0.99); NSE4 (0.989); MMS21 (0.988); YML6 (0.987); NSE1 (0.986); MRPL10 (0.985); MRPL4 (0.984); RTT107 (0.977); MRPL23 (0.969); IMG1 (0.968); MRPL27 (0.965); MRPL32 (0.965); MRPL1 (0.959); MNP1 (0.919); PTH4 (0.881); RSM23 (0.875)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005299.1:220917-222311:- | gene-YER038C_AKU4011 | rna-NM_001178929.3_AKU4011 | cds-NP_010955.3_AKU4011 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000011.1:203405-204799:+ | gene-YER038C_BG1 | rna-NM_001178929.3_BG1 | cds-NP_010955.3_BG1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005507.1:229770-231164:- | gene-YER038C_Bruggeman | rna-NM_001178929.3_Bruggeman | cds-NP_010955.3_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005523.1:223903-225297:- | gene-YER038C_CAT1 | rna-NM_001178929.3_CAT1 | cds-NP_010955.3_CAT1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005363.1:220826-222220:- | gene-YER038C_CBS1585 | rna-NM_001178929.3_CBS1585 | cds-NP_010955.3_CBS1585 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005347.1:222771-224165:- | gene-YER038C_CBS436 | rna-NM_001178929.3_CBS436 | cds-NP_010955.3_CBS436 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005331.1:220687-222081:- | gene-YER038C_CBS6412 | rna-NM_001178929.3_CBS6412 | cds-NP_010955.3_CBS6412 | 98.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005315.1:226297-227691:- | gene-YER038C_CBS6413 | rna-NM_001178929.3_CBS6413 | cds-NP_010955.3_CBS6413 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001526.1:225053-226447:- | gene-YER038C_CENPK1137D | rna-NM_001178929.3_CENPK1137D | cds-NP_010955.3_CENPK1137D | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005475.1:221521-222915:- | gene-YER038C_EthanolRed | rna-NM_001178929.3_EthanolRed | cds-NP_010955.3_EthanolRed | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005539.1:221784-223178:- | gene-YER038C_FaliES1 | rna-NM_001178929.3_FaliES1 | cds-NP_010955.3_FaliES1 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000192.1:19548-20942:- | gene-YER038C_JAY291 | rna-NM_001178929.3_JAY291 | cds-NP_010955.3_JAY291 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005411.1:225217-226611:- | gene-YER038C_MUCL30387 | rna-NM_001178929.3_MUCL30387 | cds-NP_010955.3_MUCL30387 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005443.1:221435-222829:- | gene-YER038C_MUCL30388 | rna-NM_001178929.3_MUCL30388 | cds-NP_010955.3_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005283.1:219868-221262:- | gene-YER038C_MUCL39482 | rna-NM_001178929.3_MUCL39482 | cds-NP_010955.3_MUCL39482 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005427.1:226944-228338:- | gene-YER038C_MUCL42920 | rna-NM_001178929.3_MUCL42920 | cds-NP_010955.3_MUCL42920 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011814.1:226857-228251:- | gene-YER038C_NCIM3186 | rna-NM_001178929.3_NCIM3186 | cds-NP_010955.3_NCIM3186 | 83.2 | 100.0 | Verified | 1 | 1 | 0 | False | False | True | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005267.1:224930-226324:- | gene-YER038C_NCYC1407 | rna-NM_001178929.3_NCYC1407 | cds-NP_010955.3_NCYC1407 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994144.1:235559-236953:- | gene-YER038C_PE2H3 | rna-NM_001178929.3_PE2H3 | cds-NP_010955.3_PE2H3 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999876.1:225500-226894:- | gene-YER038C_PE2H4 | rna-NM_001178929.3_PE2H4 | cds-NP_010955.3_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001137.3:226858-228252:- | gene-YER038C_S288C | rna-NM_001178929.3_S288C | cds-NP_010955.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000020.1:15434-16828:+ | gene-YER038C_SA1 | rna-NM_001178929.3_SA1 | cds-NP_010955.3_SA1 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005491.1:222556-223950:- | gene-YER038C_ThermosaccDry | rna-NM_001178929.3_ThermosaccDry | cds-NP_010955.3_ThermosaccDry | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005459.1:221655-223049:- | gene-YER038C_VR1 | rna-NM_001178929.3_VR1 | cds-NP_010955.3_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000009.1:219769-221163:- | gene-YER038C_ZTW1 | rna-NM_001178929.3_ZTW1 | cds-NP_010955.3_ZTW1 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047491.1:223594-224982:- | gene-YER038C_Sparadoxus | rna-NM_001178929.3_Sparadoxus | cds-NP_010955.3_Sparadoxus | 85.6 | 99.4 | Verified | 1 | 1 | 1 | False | True | False | False | False |