Gene name: KAP123
Reference locus (S288C): YER110C
Gene biotype: protein_coding
Description: Importin subunit beta-4; Karyopherin beta; mediates nuclear import of ribosomal proteins prior to assembly into ribosomes and import of histones H3 and H4; localizes to the nuclear pore, nucleus, and cytoplasm; exhibits genetic interactions with RAI1
Top 10 interactors (score): GSP1 (0.999); KAP95 (0.999); CRM1 (0.997); CSE1 (0.997); KAP104 (0.995); KAP114 (0.99); SRP1 (0.988); RPA135 (0.984); KAP120 (0.982); SXM1 (0.982); NUG1 (0.981); NMD5 (0.981); KRE33 (0.979); GSP2 (0.975); NUP116 (0.967); NOP1 (0.967); ERB1 (0.964); RPA190 (0.962); NUP100 (0.962); PWP2 (0.957)
Homologues (species, bitscore): IPO4 (Homo sapiens, 245.4); Ipo4 (Mus musculus, 232.6); ipo4 (Danio rerio, 246.5); ipo4 (Xenopus tropicalis, 245.7); Karybeta3 (Drosophila melanogaster, 165.6); imb-3 (Caenorhabditis elegans, 101.3); AT4G27640 (Arabidopsis thaliana, 285.8)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005299.1:372648-375989:- | gene-YER110C_AKU4011 | rna-NM_001179000.1_AKU4011 | cds-NP_011035.1_AKU4011 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000011.1:49618-52959:+ | gene-YER110C_BG1 | rna-NM_001179000.1_BG1 | cds-NP_011035.1_BG1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005507.1:383123-386464:- | gene-YER110C_Bruggeman | rna-NM_001179000.1_Bruggeman | cds-NP_011035.1_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005523.1:377659-381000:- | gene-YER110C_CAT1 | rna-NM_001179000.1_CAT1 | cds-NP_011035.1_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005363.1:372043-375384:- | gene-YER110C_CBS1585 | rna-NM_001179000.1_CBS1585 | cds-NP_011035.1_CBS1585 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005347.1:374747-378088:- | gene-YER110C_CBS436 | rna-NM_001179000.1_CBS436 | cds-NP_011035.1_CBS436 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005331.1:371117-374458:- | gene-YER110C_CBS6412 | rna-NM_001179000.1_CBS6412 | cds-NP_011035.1_CBS6412 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005315.1:377962-381303:- | gene-YER110C_CBS6413 | rna-NM_001179000.1_CBS6413 | cds-NP_011035.1_CBS6413 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001526.1:376512-379853:- | gene-YER110C_CENPK1137D | rna-NM_001179000.1_CENPK1137D | cds-NP_011035.1_CENPK1137D | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005475.1:372494-375835:- | gene-YER110C_EthanolRed | rna-NM_001179000.1_EthanolRed | cds-NP_011035.1_EthanolRed | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005539.1:372975-376316:- | gene-YER110C_FaliES1 | rna-NM_001179000.1_FaliES1 | cds-NP_011035.1_FaliES1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000174.1:15221-18562:+ | gene-YER110C_JAY291 | rna-NM_001179000.1_JAY291 | cds-NP_011035.1_JAY291 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005411.1:380070-383411:- | gene-YER110C_MUCL30387 | rna-NM_001179000.1_MUCL30387 | cds-NP_011035.1_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005443.1:375015-378356:- | gene-YER110C_MUCL30388 | rna-NM_001179000.1_MUCL30388 | cds-NP_011035.1_MUCL30388 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005283.1:371067-374408:- | gene-YER110C_MUCL39482 | rna-NM_001179000.1_MUCL39482 | cds-NP_011035.1_MUCL39482 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005427.1:379559-382900:- | gene-YER110C_MUCL42920 | rna-NM_001179000.1_MUCL42920 | cds-NP_011035.1_MUCL42920 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011814.1:378761-382102:- | gene-YER110C_NCIM3186 | rna-NM_001179000.1_NCIM3186 | cds-NP_011035.1_NCIM3186 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005267.1:376600-379941:- | gene-YER110C_NCYC1407 | rna-NM_001179000.1_NCYC1407 | cds-NP_011035.1_NCYC1407 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994144.1:387149-390490:- | gene-YER110C_PE2H3 | rna-NM_001179000.1_PE2H3 | cds-NP_011035.1_PE2H3 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999876.1:377090-380431:- | gene-YER110C_PE2H4 | rna-NM_001179000.1_PE2H4 | cds-NP_011035.1_PE2H4 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001137.3:378762-382103:- | gene-YER110C_S288C | rna-NM_001179000.1_S288C | cds-NP_011035.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000023.1:88381-91722:- | gene-YER110C_SA1 | rna-NM_001179000.1_SA1 | cds-NP_011035.1_SA1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005491.1:373772-377113:- | gene-YER110C_ThermosaccDry | rna-NM_001179000.1_ThermosaccDry | cds-NP_011035.1_ThermosaccDry | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005459.1:374837-378178:- | gene-YER110C_VR1 | rna-NM_001179000.1_VR1 | cds-NP_011035.1_VR1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000009.1:370891-374232:- | gene-YER110C_ZTW1 | rna-NM_001179000.1_ZTW1 | cds-NP_011035.1_ZTW1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047491.1:374875-378216:- | gene-YER110C_Sparadoxus | rna-NM_001179000.1_Sparadoxus | cds-NP_011035.1_Sparadoxus | 92.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |