Gene name: JSN1
Reference locus (S288C): YJR091C
Gene biotype: protein_coding
Description: Protein JSN1; Member of the Puf family of RNA-binding proteins; interacts with mRNAs encoding membrane-associated proteins; involved in localizing the Arp2/3 complex to mitochondria; overexpression causes increased sensitivity to benomyl; JSN1 has a paralog, PUF2, that arose from the whole genome duplication
Top 10 interactors (score): PUF6 (0.918); HEK2 (0.826); MRN1 (0.771); SCP160 (0.753); SHE2 (0.745); PUB1 (0.745); COX17 (0.697); WHI3 (0.677); DHH1 (0.672); MPT5 (0.658); YLL032C (0.624); CDC33 (0.609); ARC18 (0.604); PUF4 (0.591); VTS1 (0.573); MDM12 (0.57); BFR1 (0.561); MOT2 (0.556); NOT5 (0.545); PAB1 (0.541)
Homologues (species, bitscore): PUM2 (Homo sapiens, 67.0); Pum2 (Mus musculus, 68.9); pum1 (Danio rerio, 60.1); pum2 (Xenopus tropicalis, 66.2); pum (Drosophila melanogaster, 67.8); puf-9 (Caenorhabditis elegans, 68.2); PUM9 (Arabidopsis thaliana, 78.6)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005304.1:566581-569856:- | gene-YJR091C_AKU4011 | rna-NM_001181748.1_AKU4011 | cds-NP_012624.1_AKU4011 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000190.1:37719-40994:+ | gene-YJR091C_BG1 | rna-NM_001181748.1_BG1 | cds-NP_012624.1_BG1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005512.1:580095-583370:- | gene-YJR091C_Bruggeman | rna-NM_001181748.1_Bruggeman | cds-NP_012624.1_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005528.1:584491-587766:- | gene-YJR091C_CAT1 | rna-NM_001181748.1_CAT1 | cds-NP_012624.1_CAT1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005368.1:578645-581920:- | gene-YJR091C_CBS1585 | rna-NM_001181748.1_CBS1585 | cds-NP_012624.1_CBS1585 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005352.1:596731-600006:- | gene-YJR091C_CBS436 | rna-NM_001181748.1_CBS436 | cds-NP_012624.1_CBS436 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005336.1:565793-569068:- | gene-YJR091C_CBS6412 | rna-NM_001181748.1_CBS6412 | cds-NP_012624.1_CBS6412 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005320.1:568087-571362:- | gene-YJR091C_CBS6413 | rna-NM_001181748.1_CBS6413 | cds-NP_012624.1_CBS6413 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001531.1:577405-580680:- | gene-YJR091C_CENPK1137D | rna-NM_001181748.1_CENPK1137D | cds-NP_012624.1_CENPK1137D | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005480.1:570980-574255:- | gene-YJR091C_EthanolRed | rna-NM_001181748.1_EthanolRed | cds-NP_012624.1_EthanolRed | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005544.1:582446-585721:- | gene-YJR091C_FaliES1 | rna-NM_001181748.1_FaliES1 | cds-NP_012624.1_FaliES1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000054.1:103676-106951:+ | gene-YJR091C_JAY291 | rna-NM_001181748.1_JAY291 | cds-NP_012624.1_JAY291 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005416.1:580625-583900:- | gene-YJR091C_MUCL30387 | rna-NM_001181748.1_MUCL30387 | cds-NP_012624.1_MUCL30387 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005448.1:577921-581196:- | gene-YJR091C_MUCL30388 | rna-NM_001181748.1_MUCL30388 | cds-NP_012624.1_MUCL30388 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005288.1:572105-575380:- | gene-YJR091C_MUCL39482 | rna-NM_001181748.1_MUCL39482 | cds-NP_012624.1_MUCL39482 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005432.1:576351-579626:- | gene-YJR091C_MUCL42920 | rna-NM_001181748.1_MUCL42920 | cds-NP_012624.1_MUCL42920 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011819.1:595040-598315:- | gene-YJR091C_NCIM3186 | rna-NM_001181748.1_NCIM3186 | cds-NP_012624.1_NCIM3186 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005272.1:569671-572946:- | gene-YJR091C_NCYC1407 | rna-NM_001181748.1_NCYC1407 | cds-NP_012624.1_NCYC1407 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994149.1:587565-590840:- | gene-YJR091C_PE2H3 | rna-NM_001181748.1_PE2H3 | cds-NP_012624.1_PE2H3 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999881.1:581254-584529:- | gene-YJR091C_PE2H4 | rna-NM_001181748.1_PE2H4 | cds-NP_012624.1_PE2H4 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001142.9:595061-598336:- | gene-YJR091C_S288C | rna-NM_001181748.1_S288C | cds-NP_012624.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000038.1:53630-56905:- | gene-YJR091C_SA1 | rna-NM_001181748.1_SA1 | cds-NP_012624.1_SA1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005496.1:576380-579655:- | gene-YJR091C_ThermosaccDry | rna-NM_001181748.1_ThermosaccDry | cds-NP_012624.1_ThermosaccDry | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005464.1:578523-581798:- | gene-YJR091C_VR1 | rna-NM_001181748.1_VR1 | cds-NP_012624.1_VR1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000021.1:555765-559040:- | gene-YJR091C_ZTW1 | rna-NM_001181748.1_ZTW1 | cds-NP_012624.1_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047496.1:589166-592450:- | gene-YJR091C_Sparadoxus | rna-NM_001181748.1_Sparadoxus | cds-NP_012624.1_Sparadoxus | 90.0 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |