Gene name: JIP5
Reference locus (S288C): YPR169W
Gene biotype: protein_coding
Description: WD repeat-containing protein JIP5; Protein required for biogenesis of the large ribosomal subunit; required for biogenesis of the large ribosomal subunit; interacts with proteins involved in RNA processing, ribosome biogenesis, ubiquitination and demethylation; similar to WDR55, a human WD repeat protein; essential gene
Top 10 interactors (score): UTP7 (0.953); MSL5 (0.946); BUD23 (0.938); RPF2 (0.93); PWP2 (0.915); RPC40 (0.896); RRS1 (0.895); SOF1 (0.893); NOP16 (0.886); ENP1 (0.875); PUF6 (0.858); BCP1 (0.852); YTM1 (0.852); RIO1 (0.84); RPA43 (0.809); SGD1 (0.801); NOP15 (0.798); RRP9 (0.788); BUD22 (0.774); NAN1 (0.761)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005310.1:832969-834447:+ | gene-YPR169W_AKU4011 | rna-NM_001184266.1_AKU4011 | cds-NP_015495.2_AKU4011 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000091.1:63264-64742:- | gene-YPR169W_BG1 | rna-NM_001184266.1_BG1 | cds-NP_015495.2_BG1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005518.1:913163-914641:+ | gene-YPR169W_Bruggeman | rna-NM_001184266.1_Bruggeman | cds-NP_015495.2_Bruggeman | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005534.1:955762-957240:+ | gene-YPR169W_CAT1 | rna-NM_001184266.1_CAT1 | cds-NP_015495.2_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005374.1:837771-839249:+ | gene-YPR169W_CBS1585 | rna-NM_001184266.1_CBS1585 | cds-NP_015495.2_CBS1585 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005358.1:851318-852796:+ | gene-YPR169W_CBS436 | rna-NM_001184266.1_CBS436 | cds-NP_015495.2_CBS436 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005342.1:839555-841033:+ | gene-YPR169W_CBS6412 | rna-NM_001184266.1_CBS6412 | cds-NP_015495.2_CBS6412 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005326.1:834699-836177:+ | gene-YPR169W_CBS6413 | rna-NM_001184266.1_CBS6413 | cds-NP_015495.2_CBS6413 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001537.1:878777-880255:+ | gene-YPR169W_CENPK1137D | rna-NM_001184266.1_CENPK1137D | cds-NP_015495.2_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005486.1:1154604-1156082:+ | gene-YPR169W_EthanolRed | rna-NM_001184266.1_EthanolRed | cds-NP_015495.2_EthanolRed | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005550.1:834310-835788:+ | gene-YPR169W_FaliES1 | rna-NM_001184266.1_FaliES1 | cds-NP_015495.2_FaliES1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000081.1:22099-23577:+ | gene-YPR169W_JAY291 | rna-NM_001184266.1_JAY291 | cds-NP_015495.2_JAY291 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005422.1:881248-882726:+ | gene-YPR169W_MUCL30387 | rna-NM_001184266.1_MUCL30387 | cds-NP_015495.2_MUCL30387 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005454.1:854073-855551:+ | gene-YPR169W_MUCL30388 | rna-NM_001184266.1_MUCL30388 | cds-NP_015495.2_MUCL30388 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005294.1:829971-831449:+ | gene-YPR169W_MUCL39482 | rna-NM_001184266.1_MUCL39482 | cds-NP_015495.2_MUCL39482 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005438.1:893635-895113:+ | gene-YPR169W_MUCL42920 | rna-NM_001184266.1_MUCL42920 | cds-NP_015495.2_MUCL42920 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011825.1:878673-880151:+ | gene-YPR169W_NCIM3186 | rna-NM_001184266.1_NCIM3186 | cds-NP_015495.2_NCIM3186 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005278.1:838332-839810:+ | gene-YPR169W_NCYC1407 | rna-NM_001184266.1_NCYC1407 | cds-NP_015495.2_NCYC1407 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994155.1:850623-852101:+ | gene-YPR169W_PE2H3 | rna-NM_001184266.1_PE2H3 | cds-NP_015495.2_PE2H3 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999887.1:850271-851749:+ | gene-YPR169W_PE2H4 | rna-NM_001184266.1_PE2H4 | cds-NP_015495.2_PE2H4 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001148.4:878690-880168:+ | gene-YPR169W_S288C | rna-NM_001184266.1_S288C | cds-NP_015495.2_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000060.1:45983-47461:- | gene-YPR169W_SA1 | rna-NM_001184266.1_SA1 | cds-NP_015495.2_SA1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005502.1:833998-835476:+ | gene-YPR169W_ThermosaccDry | rna-NM_001184266.1_ThermosaccDry | cds-NP_015495.2_ThermosaccDry | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005470.1:862278-863756:+ | gene-YPR169W_VR1 | rna-NM_001184266.1_VR1 | cds-NP_015495.2_VR1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000033.1:837041-838519:+ | gene-YPR169W_ZTW1 | rna-NM_001184266.1_ZTW1 | cds-NP_015495.2_ZTW1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047502.1:839228-840727:+ | gene-YPR169W_Sparadoxus | rna-NM_001184266.1_Sparadoxus | cds-NP_015495.2_Sparadoxus | 86.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |