Gene name: JIP4
Reference locus (S288C): YDR475C
Gene biotype: protein_coding
Description: Uncharacterized protein JIP4; Protein of unknown function; previously annotated as two separate ORFs, YDR474C and YDR475C, which were merged as a result of corrections to the systematic reference sequence; JIP4 has a paralog, YOR019W, that arose from the whole genome duplication
Top 10 interactors (score): YPR089W (0.813); JIP3 (0.779); TPH3 (0.779); SNM1 (0.765); YIL054W (0.749); YHR173C (0.749); YNL140C (0.748); YOR105W (0.745); YER084W (0.745); YDR476C (0.744); YLR358C (0.744); YNL184C (0.712); N1795 (0.712); BBC1 (0.709); LSB3 (0.699); YJR146W (0.697); SWH1 (0.677); GLC7 (0.666); BLM10 (0.614); RIM8 (0.611)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:1347391-1350021:- | gene-YDR475C_AKU4011 | rna-NM_001180783.1_AKU4011 | cds-NP_010763.2_AKU4011 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000039.1:222490-225120:- | gene-YDR475C_BG1 | rna-NM_001180783.1_BG1 | cds-NP_010763.2_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:1378798-1381428:- | gene-YDR475C_Bruggeman | rna-NM_001180783.1_Bruggeman | cds-NP_010763.2_Bruggeman | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:1355940-1358570:- | gene-YDR475C_CAT1 | rna-NM_001180783.1_CAT1 | cds-NP_010763.2_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:1341687-1344317:- | gene-YDR475C_CBS1585 | rna-NM_001180783.1_CBS1585 | cds-NP_010763.2_CBS1585 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:1361048-1363678:- | gene-YDR475C_CBS436 | rna-NM_001180783.1_CBS436 | cds-NP_010763.2_CBS436 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:1337314-1339944:- | gene-YDR475C_CBS6412 | rna-NM_001180783.1_CBS6412 | cds-NP_010763.2_CBS6412 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:1360325-1362955:- | gene-YDR475C_CBS6413 | rna-NM_001180783.1_CBS6413 | cds-NP_010763.2_CBS6413 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:1406160-1408790:- | gene-YDR475C_CENPK1137D | rna-NM_001180783.1_CENPK1137D | cds-NP_010763.2_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:1350729-1353359:- | gene-YDR475C_EthanolRed | rna-NM_001180783.1_EthanolRed | cds-NP_010763.2_EthanolRed | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:1354282-1356912:- | gene-YDR475C_FaliES1 | rna-NM_001180783.1_FaliES1 | cds-NP_010763.2_FaliES1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000026.1:52532-55162:- | gene-YDR475C_JAY291 | rna-NM_001180783.1_JAY291 | cds-NP_010763.2_JAY291 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:1361289-1363919:- | gene-YDR475C_MUCL30387 | rna-NM_001180783.1_MUCL30387 | cds-NP_010763.2_MUCL30387 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:1343312-1345942:- | gene-YDR475C_MUCL30388 | rna-NM_001180783.1_MUCL30388 | cds-NP_010763.2_MUCL30388 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:1333171-1335801:- | gene-YDR475C_MUCL39482 | rna-NM_001180783.1_MUCL39482 | cds-NP_010763.2_MUCL39482 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:1275964-1278594:- | gene-YDR475C_MUCL42920 | rna-NM_001180783.1_MUCL42920 | cds-NP_010763.2_MUCL42920 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:1407387-1410017:- | gene-YDR475C_NCIM3186 | rna-NM_001180783.1_NCIM3186 | cds-NP_010763.2_NCIM3186 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:1346944-1349574:- | gene-YDR475C_NCYC1407 | rna-NM_001180783.1_NCYC1407 | cds-NP_010763.2_NCYC1407 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:1357783-1360413:- | gene-YDR475C_PE2H3 | rna-NM_001180783.1_PE2H3 | cds-NP_010763.2_PE2H3 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:1363357-1365987:- | gene-YDR475C_PE2H4 | rna-NM_001180783.1_PE2H4 | cds-NP_010763.2_PE2H4 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:1407464-1410094:- | gene-YDR475C_S288C | rna-NM_001180783.1_S288C | cds-NP_010763.2_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000004.1:207067-209697:+ | gene-YDR475C_SA1 | rna-NM_001180783.1_SA1 | cds-NP_010763.2_SA1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:1358504-1361134:- | gene-YDR475C_ThermosaccDry | rna-NM_001180783.1_ThermosaccDry | cds-NP_010763.2_ThermosaccDry | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:1374226-1376856:- | gene-YDR475C_VR1 | rna-NM_001180783.1_VR1 | cds-NP_010763.2_VR1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000008.1:401175-403805:- | gene-YDR475C_ZTW1 | rna-NM_001180783.1_ZTW1 | cds-NP_010763.2_ZTW1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:1361317-1363932:- | gene-YDR475C_Sparadoxus | rna-NM_001180783.1_Sparadoxus | cds-NP_010763.2_Sparadoxus | 87.8 | 99.4 | Verified | 1 | 1 | 1 | False | True | False | False | False |