Gene name: JHD1
Reference locus (S288C): YER051W
Gene biotype: protein_coding
Description: JmjC domain family histone demethylase specific for H3-K36; similar to proteins found in human, mouse, drosophila, X. laevis, C. elegans, and S. pombe; Belongs to the JHDM1 histone demethylase family
Top 10 interactors (score): RPH1 (0.985); JHD2 (0.984); SKP1 (0.979); SET1 (0.961); HHT1 (0.96); HHT2 (0.96); SET2 (0.959); GIS1 (0.946); UFD4 (0.939); ECM5 (0.924); RPD3 (0.831); HTZ1 (0.826); TAF6 (0.792); HDA1 (0.787); HHF1 (0.784); CYC8 (0.761); HTA1 (0.755); GCN5 (0.75); HTA2 (0.74); TAF10 (0.735)
Homologues (species, bitscore): KDM2A (Homo sapiens, 191.8); Kdm2a (Mus musculus, 192.6); kdm2aa (Danio rerio, 193.7); kdm2a (Xenopus tropicalis, 196.4); Kdm2 (Drosophila melanogaster, 196.8); T26A5.5 (Caenorhabditis elegans, 158.3)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005299.1:248459-249937:+ | gene-YER051W_AKU4011 | rna-NM_001178942.1_AKU4011 | cds-NP_010971.1_AKU4011 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000011.1:175871-177349:- | gene-YER051W_BG1 | rna-NM_001178942.1_BG1 | cds-NP_010971.1_BG1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005507.1:257250-258728:+ | gene-YER051W_Bruggeman | rna-NM_001178942.1_Bruggeman | cds-NP_010971.1_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005523.1:251401-252879:+ | gene-YER051W_CAT1 | rna-NM_001178942.1_CAT1 | cds-NP_010971.1_CAT1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005363.1:248305-249783:+ | gene-YER051W_CBS1585 | rna-NM_001178942.1_CBS1585 | cds-NP_010971.1_CBS1585 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005347.1:250219-251697:+ | gene-YER051W_CBS436 | rna-NM_001178942.1_CBS436 | cds-NP_010971.1_CBS436 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005331.1:247774-249252:+ | gene-YER051W_CBS6412 | rna-NM_001178942.1_CBS6412 | cds-NP_010971.1_CBS6412 | 99.1 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005315.1:253799-255277:+ | gene-YER051W_CBS6413 | rna-NM_001178942.1_CBS6413 | cds-NP_010971.1_CBS6413 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001526.1:252518-253996:+ | gene-YER051W_CENPK1137D | rna-NM_001178942.1_CENPK1137D | cds-NP_010971.1_CENPK1137D | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005475.1:248785-250263:+ | gene-YER051W_EthanolRed | rna-NM_001178942.1_EthanolRed | cds-NP_010971.1_EthanolRed | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005539.1:249255-250733:+ | gene-YER051W_FaliES1 | rna-NM_001178942.1_FaliES1 | cds-NP_010971.1_FaliES1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000192.1:47011-48489:+ | gene-YER051W_JAY291 | rna-NM_001178942.1_JAY291 | cds-NP_010971.1_JAY291 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005411.1:252708-254186:+ | gene-YER051W_MUCL30387 | rna-NM_001178942.1_MUCL30387 | cds-NP_010971.1_MUCL30387 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005443.1:248877-250355:+ | gene-YER051W_MUCL30388 | rna-NM_001178942.1_MUCL30388 | cds-NP_010971.1_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005283.1:247327-248805:+ | gene-YER051W_MUCL39482 | rna-NM_001178942.1_MUCL39482 | cds-NP_010971.1_MUCL39482 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005427.1:254391-255869:+ | gene-YER051W_MUCL42920 | rna-NM_001178942.1_MUCL42920 | cds-NP_010971.1_MUCL42920 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011814.1:254655-256133:+ | gene-YER051W_NCIM3186 | rna-NM_001178942.1_NCIM3186 | cds-NP_010971.1_NCIM3186 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005267.1:252409-253887:+ | gene-YER051W_NCYC1407 | rna-NM_001178942.1_NCYC1407 | cds-NP_010971.1_NCYC1407 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994144.1:263036-264514:+ | gene-YER051W_PE2H3 | rna-NM_001178942.1_PE2H3 | cds-NP_010971.1_PE2H3 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999876.1:252977-254455:+ | gene-YER051W_PE2H4 | rna-NM_001178942.1_PE2H4 | cds-NP_010971.1_PE2H4 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001137.3:254656-256134:+ | gene-YER051W_S288C | rna-NM_001178942.1_S288C | cds-NP_010971.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000059.1:41125-42603:+ | gene-YER051W_SA1 | rna-NM_001178942.1_SA1 | cds-NP_010971.1_SA1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005491.1:250045-251523:+ | gene-YER051W_ThermosaccDry | rna-NM_001178942.1_ThermosaccDry | cds-NP_010971.1_ThermosaccDry | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005459.1:249113-250591:+ | gene-YER051W_VR1 | rna-NM_001178942.1_VR1 | cds-NP_010971.1_VR1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000009.1:247233-248711:+ | gene-YER051W_ZTW1 | rna-NM_001178942.1_ZTW1 | cds-NP_010971.1_ZTW1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047491.1:251086-252564:+ | gene-YER051W_Sparadoxus | rna-NM_001178942.1_Sparadoxus | cds-NP_010971.1_Sparadoxus | 88.0 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |