IRT1 (YNCJ0028C)

Gene profile

Gene name: IRT1
Reference locus (S288C): YNCJ0028C
Gene biotype: ncRNA

Description: Unknown

Top 10 interactors (score): Unknown

Homologues (species, bitscore): Unknown

External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser

Comparative analysis of strains

Search table

strain assembly application macro_region gene_coord geneID rnaID protID %id %cov_exon status copyNumber copyID nORFs match_ref_CDS validORF missing_startCodon missing_stopCodon outOfFrame_stopCodon
AKU4011 GCA_001738255.1 Sake Asia CM005304.1:577435-578923:- gene-YNCJ0028C_AKU4011 rna-NR_132197.1_AKU4011 Unknown 99.6 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
BG1 GCA_001932575.1 Bioethanol South America MSHP01000190.1:28653-30140:+ gene-YNCJ0028C_BG1 rna-NR_132197.1_BG1 Unknown 97.3 99.7 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
Bruggeman GCA_001738585.1 Bread Not Applicable CM005512.1:590945-592431:- gene-YNCJ0028C_Bruggeman rna-NR_132197.1_Bruggeman Unknown 98.9 99.8 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
CAT1 GCA_001738705.1 Bioethanol South America MBWC01000326.1:1-1376:- gene-YNCJ0028C_CAT1 rna-NR_132197.1_CAT1 Unknown 90.5 92.4 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
CBS1585 GCA_001738375.1 Sake Asia CM005368.1:589499-590987:- gene-YNCJ0028C_CBS1585 rna-NR_132197.1_CBS1585 Unknown 99.6 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
CBS436 GCA_001738355.1 Sake Asia CM005352.1:607604-609091:- gene-YNCJ0028C_CBS436 rna-NR_132197.1_CBS436 Unknown 97.5 99.7 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
CBS6412 GCA_001738345.1 Sake Asia CM005336.1:576647-578135:- gene-YNCJ0028C_CBS6412 rna-NR_132197.1_CBS6412 Unknown 99.6 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
CBS6413 GCA_001738265.1 Sake Asia CM005320.1:578941-580429:- gene-YNCJ0028C_CBS6413 rna-NR_132197.1_CBS6413 Unknown 99.6 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
CENPK1137D GCA_000269885.1 Laboratory Not Applicable CM001531.1:588259-589747:- gene-YNCJ0028C_CENPK1137D rna-NR_132197.1_CENPK1137D Unknown 99.7 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
EthanolRed GCA_001738615.1 Bioethanol Asia CM005480.1:581855-583343:- gene-YNCJ0028C_EthanolRed rna-NR_132197.1_EthanolRed Unknown 99.9 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
FaliES1 GCA_001738715.1 Bioethanol Asia CM005544.1:593321-594809:- gene-YNCJ0028C_FaliES1 rna-NR_132197.1_FaliES1 Unknown 99.9 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
JAY291 GCA_000182315.2 Bioethanol South America ACFL01000054.1:94609-96097:+ gene-YNCJ0028C_JAY291 rna-NR_132197.1_JAY291 Unknown 99.5 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
MUCL30387 GCA_001738515.1 Bread Europe CM005416.1:591477-592963:- gene-YNCJ0028C_MUCL30387 rna-NR_132197.1_MUCL30387 Unknown 99.0 99.8 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
MUCL30388 GCA_001738495.1 Bread Europe CM005448.1:588787-590273:- gene-YNCJ0028C_MUCL30388 rna-NR_132197.1_MUCL30388 Unknown 99.0 99.8 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
MUCL39482 GCA_001738235.1 Sake Asia CM005288.1:582959-584447:- gene-YNCJ0028C_MUCL39482 rna-NR_132197.1_MUCL39482 Unknown 99.6 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
MUCL42920 GCA_001738485.1 Bread Europe CM005432.1:587217-588703:- gene-YNCJ0028C_MUCL42920 rna-NR_132197.1_MUCL42920 Unknown 98.9 99.8 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
NCIM3186 GCA_001029075.1 Bioethanol Asia CP011819.1:605915-607403:- gene-YNCJ0028C_NCIM3186 rna-NR_132197.1_NCIM3186 Unknown 98.9 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
NCYC1407 GCA_001738225.1 Sake Asia CM005272.1:580525-582013:- gene-YNCJ0028C_NCYC1407 rna-NR_132197.1_NCYC1407 Unknown 99.8 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
PE2H3 GCA_905220325.1 Bioethanol South America HG994149.1:598419-599907:- gene-YNCJ0028C_PE2H3 rna-NR_132197.1_PE2H3 Unknown 99.5 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
PE2H4 GCA_905220315.1 Bioethanol South America LR999881.1:592108-593596:- gene-YNCJ0028C_PE2H4 rna-NR_132197.1_PE2H4 Unknown 99.5 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
S288C GCF_000146045.2 Laboratory Not applicable NC_001142.9:605936-607424:- gene-YNCJ0028C_S288C rna-NR_132197.1_S288C Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
SA1 GCA_004114265.1 Bioethanol South America SDIA01000038.1:64503-65990:- gene-YNCJ0028C_SA1 rna-NR_132197.1_SA1 Unknown 97.5 99.7 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
ThermosaccDry GCA_001738605.1 Bioethanol Asia CM005496.1:587255-588743:- gene-YNCJ0028C_ThermosaccDry rna-NR_132197.1_ThermosaccDry Unknown 99.9 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
VR1 GCA_001738595.1 Bioethanol South America CM005464.1:589377-590865:- gene-YNCJ0028C_VR1 rna-NR_132197.1_VR1 Unknown 99.4 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
ZTW1 GCA_000308935.1 Bioethanol Asia AMDD01000021.1:566619-568107:- gene-YNCJ0028C_ZTW1 rna-NR_132197.1_ZTW1 Unknown 98.1 99.7 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
Sparadoxus GCF_002079055.1 Not applicable Not applicable NC_047496.1:600061-601523:- gene-YNCJ0028C_Sparadoxus rna-NR_132197.1_Sparadoxus Unknown 79.1 94.5 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding

Additional files