Gene name: IRC6
Reference locus (S288C): YFR043C
Gene biotype: protein_coding
Description: Increased recombination centers protein 6; Clathrin coat accessory factor; involved in clathrin-mediated vesicle trafficking; may function to link the AP-1 clathrin adaptor complex with the Rab GTPase Ypt31p; has structural similarity to G-proteins; mouse homolog Aagab (p34) functionally complements irc6 null mutation; null mutant displays increased levels of spontaneous Rad52p foci
Top 10 interactors (score): YPT31 (0.818); GEA1 (0.713); CHS6 (0.712); CHS3 (0.71); ARF1 (0.7); YPT32 (0.678); SEC4 (0.659); ARL1 (0.655); CHC1 (0.649); APL2 (0.619); SAC1 (0.481); APS1 (0.465); KEX2 (0.454); SEC7 (0.451); YPT1 (0.45); APL3 (0.441)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005300.1:229263-229976:- | gene-YFR043C_AKU4011 | rna-NM_001180008.3_AKU4011 | cds-NP_116701.3_AKU4011 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000071.1:31035-31748:+ | gene-YFR043C_BG1 | rna-NM_001180008.3_BG1 | cds-NP_116701.3_BG1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005508.1:232919-233632:- | gene-YFR043C_Bruggeman | rna-NM_001180008.3_Bruggeman | cds-NP_116701.3_Bruggeman | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005524.1:234887-235600:- | gene-YFR043C_CAT1 | rna-NM_001180008.3_CAT1 | cds-NP_116701.3_CAT1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005364.1:230763-231476:- | gene-YFR043C_CBS1585 | rna-NM_001180008.3_CBS1585 | cds-NP_116701.3_CBS1585 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005348.1:203722-204435:- | gene-YFR043C_CBS436 | rna-NM_001180008.3_CBS436 | cds-NP_116701.3_CBS436 | 99.1 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005332.1:229838-230551:- | gene-YFR043C_CBS6412 | rna-NM_001180008.3_CBS6412 | cds-NP_116701.3_CBS6412 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005316.1:232511-233224:- | gene-YFR043C_CBS6413 | rna-NM_001180008.3_CBS6413 | cds-NP_116701.3_CBS6413 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001527.1:235203-235916:- | gene-YFR043C_CENPK1137D | rna-NM_001180008.3_CENPK1137D | cds-NP_116701.3_CENPK1137D | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005476.1:228381-229094:- | gene-YFR043C_EthanolRed | rna-NM_001180008.3_EthanolRed | cds-NP_116701.3_EthanolRed | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005540.1:230031-230744:- | gene-YFR043C_FaliES1 | rna-NM_001180008.3_FaliES1 | cds-NP_116701.3_FaliES1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000453.1:33160-33873:- | gene-YFR043C_JAY291 | rna-NM_001180008.3_JAY291 | cds-NP_116701.3_JAY291 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005412.1:233368-234081:- | gene-YFR043C_MUCL30387 | rna-NM_001180008.3_MUCL30387 | cds-NP_116701.3_MUCL30387 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005444.1:228848-229561:- | gene-YFR043C_MUCL30388 | rna-NM_001180008.3_MUCL30388 | cds-NP_116701.3_MUCL30388 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005284.1:228685-229398:- | gene-YFR043C_MUCL39482 | rna-NM_001180008.3_MUCL39482 | cds-NP_116701.3_MUCL39482 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005428.1:228285-228998:- | gene-YFR043C_MUCL42920 | rna-NM_001180008.3_MUCL42920 | cds-NP_116701.3_MUCL42920 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011815.1:239113-239826:- | gene-YFR043C_NCIM3186 | rna-NM_001180008.3_NCIM3186 | cds-NP_116701.3_NCIM3186 | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005268.1:229535-230248:- | gene-YFR043C_NCYC1407 | rna-NM_001180008.3_NCYC1407 | cds-NP_116701.3_NCYC1407 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994145.1:271570-272283:- | gene-YFR043C_PE2H3 | rna-NM_001180008.3_PE2H3 | cds-NP_116701.3_PE2H3 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999877.1:271118-271831:- | gene-YFR043C_PE2H4 | rna-NM_001180008.3_PE2H4 | cds-NP_116701.3_PE2H4 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001138.5:239114-239827:- | gene-YFR043C_S288C | rna-NM_001180008.3_S288C | cds-NP_116701.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000086.1:31278-31991:+ | gene-YFR043C_SA1 | rna-NM_001180008.3_SA1 | cds-NP_116701.3_SA1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005492.1:229200-229913:- | gene-YFR043C_ThermosaccDry | rna-NM_001180008.3_ThermosaccDry | cds-NP_116701.3_ThermosaccDry | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005460.1:244952-245665:- | gene-YFR043C_VR1 | rna-NM_001180008.3_VR1 | cds-NP_116701.3_VR1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000013.1:159649-160362:- | gene-YFR043C_ZTW1 | rna-NM_001180008.3_ZTW1 | cds-NP_116701.3_ZTW1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047492.1:252703-253419:- | gene-YFR043C_Sparadoxus | rna-NM_001180008.3_Sparadoxus | cds-NP_116701.3_Sparadoxus | 86.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |