Gene name: IRC4
Reference locus (S288C): YDR540C
Gene biotype: protein_coding
Description: Uncharacterized protein IRC4; Protein of unknown function; null mutant displays increased levels of spontaneous Rad52p foci; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm and nucleus
Top 10 interactors (score): IRC14 (0.895); YPL245W (0.891); IRC9 (0.868); IRC19 (0.85); IRC7 (0.779); YJL218W (0.749); YMR090W (0.745); IRC5 (0.692); FDC1 (0.692); BDS1 (0.67); AHC1 (0.655); REE1 (0.573); RFC4 (0.572); BIO4 (0.568); IRC24 (0.561); BUD27 (0.526); WSS1 (0.499); LRS4 (0.497); RFC5 (0.485); BIO3 (0.454)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:1456735-1457274:- | gene-YDR540C_AKU4011 | rna-NM_001180848.1_AKU4011 | cds-NP_010829.1_AKU4011 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000016.1:3233-3770:- | gene-YDR540C_BG1 | rna-NM_001180848.1_BG1 | cds-NP_010829.1_BG1 | 98.7 | 99.4 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:1489553-1490092:- | gene-YDR540C_Bruggeman | rna-NM_001180848.1_Bruggeman | cds-NP_010829.1_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:1451463-1452002:- | gene-YDR540C_CBS1585 | rna-NM_001180848.1_CBS1585 | cds-NP_010829.1_CBS1585 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:1471113-1471652:- | gene-YDR540C_CBS436 | rna-NM_001180848.1_CBS436 | cds-NP_010829.1_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:1446627-1447166:- | gene-YDR540C_CBS6412 | rna-NM_001180848.1_CBS6412 | cds-NP_010829.1_CBS6412 | 98.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:1470124-1470663:- | gene-YDR540C_CBS6413 | rna-NM_001180848.1_CBS6413 | cds-NP_010829.1_CBS6413 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:1515416-1515955:- | gene-YDR540C_CENPK1137D | rna-NM_001180848.1_CENPK1137D | cds-NP_010829.1_CENPK1137D | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:1460272-1460811:- | gene-YDR540C_EthanolRed | rna-NM_001180848.1_EthanolRed | cds-NP_010829.1_EthanolRed | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:1464026-1464565:- | gene-YDR540C_FaliES1 | rna-NM_001180848.1_FaliES1 | cds-NP_010829.1_FaliES1 | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000206.1:5507-6047:+ | gene-YDR540C_JAY291 | rna-NM_001180848.1_JAY291 | cds-NP_010829.1_JAY291 | 99.2 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:1471634-1472173:- | gene-YDR540C_MUCL30387 | rna-NM_001180848.1_MUCL30387 | cds-NP_010829.1_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:1452872-1453411:- | gene-YDR540C_MUCL30388 | rna-NM_001180848.1_MUCL30388 | cds-NP_010829.1_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:1442960-1443499:- | gene-YDR540C_MUCL39482 | rna-NM_001180848.1_MUCL39482 | cds-NP_010829.1_MUCL39482 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:1386007-1386546:- | gene-YDR540C_MUCL42920 | rna-NM_001180848.1_MUCL42920 | cds-NP_010829.1_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:1517059-1517598:- | gene-YDR540C_NCIM3186 | rna-NM_001180848.1_NCIM3186 | cds-NP_010829.1_NCIM3186 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:1456462-1457001:- | gene-YDR540C_NCYC1407 | rna-NM_001180848.1_NCYC1407 | cds-NP_010829.1_NCYC1407 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:1467395-1467935:- | gene-YDR540C_PE2H3 | rna-NM_001180848.1_PE2H3 | cds-NP_010829.1_PE2H3 | 99.2 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:1472863-1473403:- | gene-YDR540C_PE2H4 | rna-NM_001180848.1_PE2H4 | cds-NP_010829.1_PE2H4 | 99.2 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:1517136-1517675:- | gene-YDR540C_S288C | rna-NM_001180848.1_S288C | cds-NP_010829.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000004.1:99637-100174:+ | gene-YDR540C_SA1 | rna-NM_001180848.1_SA1 | cds-NP_010829.1_SA1 | 98.7 | 99.4 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:1468332-1468871:- | gene-YDR540C_ThermosaccDry | rna-NM_001180848.1_ThermosaccDry | cds-NP_010829.1_ThermosaccDry | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:1484034-1484573:- | gene-YDR540C_VR1 | rna-NM_001180848.1_VR1 | cds-NP_010829.1_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000008.1:510109-510648:- | gene-YDR540C_ZTW1 | rna-NM_001180848.1_ZTW1 | cds-NP_010829.1_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |