Gene name: IPI1
Reference locus (S288C): YHR085W
Gene biotype: protein_coding
Description: Pre-rRNA-processing protein IPI1; Component of the Rix1 complex and possibly pre-replicative complexes; required for processing of ITS2 sequences from 35S pre-rRNA; component of the pre-60S ribosomal particle with the dynein-related AAA-type ATPase Mdn1p; required for pre-replicative complex (pre-RC) formation and maintenance during DNA replication licensing; relocalizes to the cytosol in response to hypoxia; essential gene; Belongs to the IPI1/TEX10 family
Top 10 interactors (score): NOG2 (0.999); NUG1 (0.999); IPI3 (0.999); NOP7 (0.999); MDN1 (0.999); NOG1 (0.999); NOC3 (0.999); RIX1 (0.999); ARX1 (0.998); DRS1 (0.998); RPF1 (0.998); CIC1 (0.997); ERB1 (0.997); BUD20 (0.997); EBP2 (0.996); PUF6 (0.996); SPB1 (0.996); SSF1 (0.996); MRT4 (0.995); LAS1 (0.995)
Homologues (species, bitscore): TEX10 (Homo sapiens, 62.0); Tex10 (Mus musculus, 55.5); tex10 (Danio rerio, 60.8); tex10 (Xenopus tropicalis, 57.8)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005302.1:263174-264178:+ | gene-YHR085W_AKU4011 | rna-NM_001179215.1_AKU4011 | cds-NP_011953.1_AKU4011 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000053.1:183521-184525:+ | gene-YHR085W_BG1 | rna-NM_001179215.1_BG1 | cds-NP_011953.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005510.1:271000-272004:+ | gene-YHR085W_Bruggeman | rna-NM_001179215.1_Bruggeman | cds-NP_011953.1_Bruggeman | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005526.1:266141-267145:+ | gene-YHR085W_CAT1 | rna-NM_001179215.1_CAT1 | cds-NP_011953.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005366.1:262216-263220:+ | gene-YHR085W_CBS1585 | rna-NM_001179215.1_CBS1585 | cds-NP_011953.1_CBS1585 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005350.1:260080-261084:+ | gene-YHR085W_CBS436 | rna-NM_001179215.1_CBS436 | cds-NP_011953.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005334.1:265563-266567:+ | gene-YHR085W_CBS6412 | rna-NM_001179215.1_CBS6412 | cds-NP_011953.1_CBS6412 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005318.1:263255-264259:+ | gene-YHR085W_CBS6413 | rna-NM_001179215.1_CBS6413 | cds-NP_011953.1_CBS6413 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001529.1:269932-270936:+ | gene-YHR085W_CENPK1137D | rna-NM_001179215.1_CENPK1137D | cds-NP_011953.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005478.1:322779-323783:+ | gene-YHR085W_EthanolRed | rna-NM_001179215.1_EthanolRed | cds-NP_011953.1_EthanolRed | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005542.1:263583-264587:+ | gene-YHR085W_FaliES1 | rna-NM_001179215.1_FaliES1 | cds-NP_011953.1_FaliES1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000394.1:46308-47312:+ | gene-YHR085W_JAY291 | rna-NM_001179215.1_JAY291 | cds-NP_011953.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005414.1:270521-271525:+ | gene-YHR085W_MUCL30387 | rna-NM_001179215.1_MUCL30387 | cds-NP_011953.1_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005446.1:270383-271387:+ | gene-YHR085W_MUCL30388 | rna-NM_001179215.1_MUCL30388 | cds-NP_011953.1_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005286.1:262539-263543:+ | gene-YHR085W_MUCL39482 | rna-NM_001179215.1_MUCL39482 | cds-NP_011953.1_MUCL39482 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005430.1:269286-270290:+ | gene-YHR085W_MUCL42920 | rna-NM_001179215.1_MUCL42920 | cds-NP_011953.1_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011817.1:276646-277650:+ | gene-YHR085W_NCIM3186 | rna-NM_001179215.1_NCIM3186 | cds-NP_011953.1_NCIM3186 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005270.1:265003-266007:+ | gene-YHR085W_NCYC1407 | rna-NM_001179215.1_NCYC1407 | cds-NP_011953.1_NCYC1407 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994147.1:264673-265677:+ | gene-YHR085W_PE2H3 | rna-NM_001179215.1_PE2H3 | cds-NP_011953.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999879.1:272120-273124:+ | gene-YHR085W_PE2H4 | rna-NM_001179215.1_PE2H4 | cds-NP_011953.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001140.6:276764-277768:+ | gene-YHR085W_S288C | rna-NM_001179215.1_S288C | cds-NP_011953.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000014.1:81220-82224:- | gene-YHR085W_SA1 | rna-NM_001179215.1_SA1 | cds-NP_011953.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005494.1:264674-265678:+ | gene-YHR085W_ThermosaccDry | rna-NM_001179215.1_ThermosaccDry | cds-NP_011953.1_ThermosaccDry | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005462.1:272548-273552:+ | gene-YHR085W_VR1 | rna-NM_001179215.1_VR1 | cds-NP_011953.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000017.1:256228-257232:+ | gene-YHR085W_ZTW1 | rna-NM_001179215.1_ZTW1 | cds-NP_011953.1_ZTW1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047494.1:261980-262984:+ | gene-YHR085W_Sparadoxus | rna-NM_001179215.1_Sparadoxus | cds-NP_011953.1_Sparadoxus | 87.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |