IPF1 (YDL176W)


Gene profile

Gene name: IPF1
Reference locus (S288C): YDL176W
Gene biotype: protein_coding

Description: Uncharacterized protein YDL176W; Protein of unknown function; predicted by computational methods to be involved in fructose-1,6-bisphosphatase (Fbp1p) degradation; interacts with components of the GID complex; YDL176W is not an essential gene

Top 10 interactors (score): VID30 (0.848); FYV10 (0.821); GID8 (0.801); HER1 (0.715); RMD5 (0.695); VID28 (0.695); VID24 (0.634); SLA2 (0.575); DMA1 (0.563); HAP2 (0.499); CMR2 (0.487); TRI1 (0.45); YKL023W (0.45); SLA1 (0.45)

Homologues (species, bitscore): Unknown

External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser


Comparative analysis of strains

Search table

strain assembly application macro_region gene_coord geneID rnaID protID %id %cov_exon status copyNumber copyID nORFs match_ref_CDS validORF missing_startCodon missing_stopCodon outOfFrame_stopCodon
AKU4011 GCA_001738255.1 Sake Asia CM005298.1:126523-128649:+ gene-YDL176W_AKU4011 rna-NM_001180236.1_AKU4011 cds-NP_010105.1_AKU4011 100.0 100.0 Verified 1 1 1 True True False False False
BG1 GCA_001932575.1 Bioethanol South America MSHP01000102.1:421060-423186:- gene-YDL176W_BG1 rna-NM_001180236.1_BG1 cds-NP_010105.1_BG1 99.5 100.0 Verified 1 1 1 False True False False False
Bruggeman GCA_001738585.1 Bread Not Applicable CM005506.1:142577-144703:+ gene-YDL176W_Bruggeman rna-NM_001180236.1_Bruggeman cds-NP_010105.1_Bruggeman 99.8 100.0 Verified 1 1 1 True True False False False
CAT1 GCA_001738705.1 Bioethanol South America CM005522.1:140904-143030:+ gene-YDL176W_CAT1 rna-NM_001180236.1_CAT1 cds-NP_010105.1_CAT1 99.9 100.0 Verified 1 1 1 True True False False False
CBS1585 GCA_001738375.1 Sake Asia CM005362.1:124561-126687:+ gene-YDL176W_CBS1585 rna-NM_001180236.1_CBS1585 cds-NP_010105.1_CBS1585 100.0 100.0 Verified 1 1 1 True True False False False
CBS436 GCA_001738355.1 Sake Asia CM005346.1:141522-143648:+ gene-YDL176W_CBS436 rna-NM_001180236.1_CBS436 cds-NP_010105.1_CBS436 99.6 100.0 Mismatch 1 1 1 True True False False False
CBS6412 GCA_001738345.1 Sake Asia CM005330.1:124124-126250:+ gene-YDL176W_CBS6412 rna-NM_001180236.1_CBS6412 cds-NP_010105.1_CBS6412 100.0 100.0 Mismatch 1 1 1 True True False False False
CBS6413 GCA_001738265.1 Sake Asia CM005314.1:142935-145061:+ gene-YDL176W_CBS6413 rna-NM_001180236.1_CBS6413 cds-NP_010105.1_CBS6413 100.0 100.0 Verified 1 1 1 True True False False False
CENPK1137D GCA_000269885.1 Laboratory Not Applicable CM001525.1:140770-142896:+ gene-YDL176W_CENPK1137D rna-NM_001180236.1_CENPK1137D cds-NP_010105.1_CENPK1137D 100.0 100.0 Verified 1 1 1 True True False False False
EthanolRed GCA_001738615.1 Bioethanol Asia CM005474.1:137943-140069:+ gene-YDL176W_EthanolRed rna-NM_001180236.1_EthanolRed cds-NP_010105.1_EthanolRed 99.7 100.0 Verified 1 1 1 True True False False False
FaliES1 GCA_001738715.1 Bioethanol Asia CM005538.1:143269-145395:+ gene-YDL176W_FaliES1 rna-NM_001180236.1_FaliES1 cds-NP_010105.1_FaliES1 99.7 100.0 Verified 1 1 1 True True False False False
JAY291 GCA_000182315.2 Bioethanol South America ACFL01000032.1:74114-76240:- gene-YDL176W_JAY291 rna-NM_001180236.1_JAY291 cds-NP_010105.1_JAY291 99.6 100.0 Verified 1 1 1 True True False False False
MUCL30387 GCA_001738515.1 Bread Europe CM005410.1:140883-143009:+ gene-YDL176W_MUCL30387 rna-NM_001180236.1_MUCL30387 cds-NP_010105.1_MUCL30387 99.5 100.0 Verified 1 1 1 False True False False False
MUCL30388 GCA_001738495.1 Bread Europe CM005442.1:132528-134654:+ gene-YDL176W_MUCL30388 rna-NM_001180236.1_MUCL30388 cds-NP_010105.1_MUCL30388 99.8 100.0 Verified 1 1 1 True True False False False
MUCL39482 GCA_001738235.1 Sake Asia CM005282.1:125703-127829:+ gene-YDL176W_MUCL39482 rna-NM_001180236.1_MUCL39482 cds-NP_010105.1_MUCL39482 100.0 100.0 Verified 1 1 1 True True False False False
MUCL42920 GCA_001738485.1 Bread Europe MBVV01000307.1:41540-43666:- gene-YDL176W_MUCL42920 rna-NM_001180236.1_MUCL42920 cds-NP_010105.1_MUCL42920 99.6 100.0 Verified 1 1 1 False True False False False
NCIM3186 GCA_001029075.1 Bioethanol Asia CP011813.1:142020-144146:+ gene-YDL176W_NCIM3186 rna-NM_001180236.1_NCIM3186 cds-NP_010105.1_NCIM3186 98.8 100.0 Verified 1 1 1 False True False False False
NCYC1407 GCA_001738225.1 Sake Asia CM005266.1:125592-127718:+ gene-YDL176W_NCYC1407 rna-NM_001180236.1_NCYC1407 cds-NP_010105.1_NCYC1407 100.0 100.0 Verified 1 1 1 True True False False False
PE2H3 GCA_905220325.1 Bioethanol South America HG994143.1:132903-135029:+ gene-YDL176W_PE2H3 rna-NM_001180236.1_PE2H3 cds-NP_010105.1_PE2H3 99.6 100.0 Verified 1 1 1 True True False False False
PE2H4 GCA_905220315.1 Bioethanol South America LR999875.1:132907-135033:+ gene-YDL176W_PE2H4 rna-NM_001180236.1_PE2H4 cds-NP_010105.1_PE2H4 99.6 100.0 Verified 1 1 1 True True False False False
S288C GCF_000146045.2 Laboratory Not applicable NC_001136.10:142097-144223:+ gene-YDL176W_S288C rna-NM_001180236.1_S288C cds-NP_010105.1_S288C 100.0 100.0 Verified 1 1 1 True True False False False
SA1 GCA_004114265.1 Bioethanol South America SDIA01000043.1:7680-9806:+ gene-YDL176W_SA1 rna-NM_001180236.1_SA1 cds-NP_010105.1_SA1 99.5 100.0 Verified 1 1 1 False True False False False
ThermosaccDry GCA_001738605.1 Bioethanol Asia CM005490.1:143029-145155:+ gene-YDL176W_ThermosaccDry rna-NM_001180236.1_ThermosaccDry cds-NP_010105.1_ThermosaccDry 99.7 100.0 Verified 1 1 1 True True False False False
VR1 GCA_001738595.1 Bioethanol South America CM005458.1:143674-145800:+ gene-YDL176W_VR1 rna-NM_001180236.1_VR1 cds-NP_010105.1_VR1 99.5 100.0 Verified 1 1 1 False True False False False
ZTW1 GCA_000308935.1 Bioethanol Asia AMDD01000006.1:141202-143328:+ gene-YDL176W_ZTW1 rna-NM_001180236.1_ZTW1 cds-NP_010105.1_ZTW1 99.8 100.0 Verified 1 1 1 True True False False False
Sparadoxus GCF_002079055.1 Not applicable Not applicable NC_047490.1:143418-145544:+ gene-YDL176W_Sparadoxus rna-NM_001180236.1_Sparadoxus cds-NP_010105.1_Sparadoxus 90.1 100.0 Verified 1 1 1 False True False False False

Additional files