Gene name: IPA1
Reference locus (S288C): YJR141W
Gene biotype: protein_coding
Description: Putative polyadenylation protein; Uncharacterized protein YJR141W; Essential protein of unknown function
Top 10 interactors (score): MPE1 (0.999); FSF1 (0.918); UBC11 (0.841); SYC1 (0.734); CFT2 (0.732); HEM12 (0.698); FIP1 (0.696); FMP27 (0.69); YSH1 (0.671); YTH1 (0.665); PTI1 (0.663); NOG2 (0.647); MTC2 (0.61); DLT1 (0.574); PTA1 (0.572); MAY24 (0.568); RPS3 (0.566); PCF11 (0.539); CLN3 (0.527); APC2 (0.521)
Homologues (species, bitscore): UBE3D (Homo sapiens, 50.1)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005304.1:667404-668447:+ | gene-YJR141W_AKU4011 | rna-NM_001181799.1_AKU4011 | cds-NP_012675.1_AKU4011 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000076.1:5155-6198:- | gene-YJR141W_BG1 | rna-NM_001181799.1_BG1 | cds-NP_012675.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005512.1:683136-684179:+ | gene-YJR141W_Bruggeman | rna-NM_001181799.1_Bruggeman | cds-NP_012675.1_Bruggeman | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005528.1:687771-688814:+ | gene-YJR141W_CAT1 | rna-NM_001181799.1_CAT1 | cds-NP_012675.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005368.1:679448-680491:+ | gene-YJR141W_CBS1585 | rna-NM_001181799.1_CBS1585 | cds-NP_012675.1_CBS1585 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005352.1:698318-699361:+ | gene-YJR141W_CBS436 | rna-NM_001181799.1_CBS436 | cds-NP_012675.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005336.1:666223-667266:+ | gene-YJR141W_CBS6412 | rna-NM_001181799.1_CBS6412 | cds-NP_012675.1_CBS6412 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005320.1:668882-669925:+ | gene-YJR141W_CBS6413 | rna-NM_001181799.1_CBS6413 | cds-NP_012675.1_CBS6413 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001531.1:678266-679309:+ | gene-YJR141W_CENPK1137D | rna-NM_001181799.1_CENPK1137D | cds-NP_012675.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005480.1:671825-672868:+ | gene-YJR141W_EthanolRed | rna-NM_001181799.1_EthanolRed | cds-NP_012675.1_EthanolRed | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005544.1:683288-684331:+ | gene-YJR141W_FaliES1 | rna-NM_001181799.1_FaliES1 | cds-NP_012675.1_FaliES1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000054.1:4827-5870:- | gene-YJR141W_JAY291 | rna-NM_001181799.1_JAY291 | cds-NP_012675.1_JAY291 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005416.1:682163-683206:+ | gene-YJR141W_MUCL30387 | rna-NM_001181799.1_MUCL30387 | cds-NP_012675.1_MUCL30387 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005448.1:679649-680692:+ | gene-YJR141W_MUCL30388 | rna-NM_001181799.1_MUCL30388 | cds-NP_012675.1_MUCL30388 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005288.1:672933-673976:+ | gene-YJR141W_MUCL39482 | rna-NM_001181799.1_MUCL39482 | cds-NP_012675.1_MUCL39482 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005432.1:677668-678711:+ | gene-YJR141W_MUCL42920 | rna-NM_001181799.1_MUCL42920 | cds-NP_012675.1_MUCL42920 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011819.1:695885-696928:+ | gene-YJR141W_NCIM3186 | rna-NM_001181799.1_NCIM3186 | cds-NP_012675.1_NCIM3186 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005272.1:670480-671523:+ | gene-YJR141W_NCYC1407 | rna-NM_001181799.1_NCYC1407 | cds-NP_012675.1_NCYC1407 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994149.1:688670-689713:+ | gene-YJR141W_PE2H3 | rna-NM_001181799.1_PE2H3 | cds-NP_012675.1_PE2H3 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999881.1:682359-683402:+ | gene-YJR141W_PE2H4 | rna-NM_001181799.1_PE2H4 | cds-NP_012675.1_PE2H4 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001142.9:695906-696949:+ | gene-YJR141W_S288C | rna-NM_001181799.1_S288C | cds-NP_012675.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000069.1:5180-6223:- | gene-YJR141W_SA1 | rna-NM_001181799.1_SA1 | cds-NP_012675.1_SA1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005496.1:677219-678262:+ | gene-YJR141W_ThermosaccDry | rna-NM_001181799.1_ThermosaccDry | cds-NP_012675.1_ThermosaccDry | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005464.1:679590-680633:+ | gene-YJR141W_VR1 | rna-NM_001181799.1_VR1 | cds-NP_012675.1_VR1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000021.1:656568-657611:+ | gene-YJR141W_ZTW1 | rna-NM_001181799.1_ZTW1 | cds-NP_012675.1_ZTW1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047496.1:690867-691907:+ | gene-YJR141W_Sparadoxus | rna-NM_001181799.1_Sparadoxus | cds-NP_012675.1_Sparadoxus | 86.8 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |