Gene name: IOC4
Reference locus (S288C): YMR044W
Gene biotype: protein_coding
Description: ISWI one complex protein 4; Member of a complex (Isw1b) with Isw1p and Ioc2p; interacts directly with H3K36me3 nucleosomes through its PWWP domain to recruit the Isw1b complex to open reading frames in a Set2p-dependent manner; Isw1b exhibits nucleosome-stimulated ATPase activity and acts within coding regions to coordinate transcription elongation with termination and processing
Top 10 interactors (score): IOC2 (0.999); IOC3 (0.994); ISW1 (0.993); DLS1 (0.97); DPB4 (0.945); ITC1 (0.927); CHD1 (0.896); HHT1 (0.889); HHT2 (0.881); ISW2 (0.875); SET2 (0.712); RCO1 (0.698); EAF3 (0.679); RSC8 (0.674); DDI2 (0.651); SNF2 (0.596); YFL066C (0.573); DDI3 (0.567); ESC8 (0.562); HHF1 (0.562)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005307.1:404979-406403:+ | gene-YMR044W_AKU4011 | rna-NM_001182541.1_AKU4011 | cds-NP_013758.1_AKU4011 | 98.8 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000201.1:136375-137811:- | gene-YMR044W_BG1 | rna-NM_001182541.1_BG1 | cds-NP_013758.1_BG1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005515.1:344919-346355:+ | gene-YMR044W_Bruggeman | rna-NM_001182541.1_Bruggeman | cds-NP_013758.1_Bruggeman | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005531.1:347463-348890:+ | gene-YMR044W_CAT1 | rna-NM_001182541.1_CAT1 | cds-NP_013758.1_CAT1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005371.1:337921-339345:+ | gene-YMR044W_CBS1585 | rna-NM_001182541.1_CBS1585 | cds-NP_013758.1_CBS1585 | 98.8 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005355.1:343464-344900:+ | gene-YMR044W_CBS436 | rna-NM_001182541.1_CBS436 | cds-NP_013758.1_CBS436 | 99.0 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005339.1:451322-452746:+ | gene-YMR044W_CBS6412 | rna-NM_001182541.1_CBS6412 | cds-NP_013758.1_CBS6412 | 98.8 | 99.7 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005323.1:337176-338600:+ | gene-YMR044W_CBS6413 | rna-NM_001182541.1_CBS6413 | cds-NP_013758.1_CBS6413 | 98.8 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001534.1:350114-351541:+ | gene-YMR044W_CENPK1137D | rna-NM_001182541.1_CENPK1137D | cds-NP_013758.1_CENPK1137D | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005483.1:337755-339179:+ | gene-YMR044W_EthanolRed | rna-NM_001182541.1_EthanolRed | cds-NP_013758.1_EthanolRed | 99.0 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005547.1:340934-342358:+ | gene-YMR044W_FaliES1 | rna-NM_001182541.1_FaliES1 | cds-NP_013758.1_FaliES1 | 99.0 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000033.1:94585-96012:- | gene-YMR044W_JAY291 | rna-NM_001182541.1_JAY291 | cds-NP_013758.1_JAY291 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005419.1:342878-344314:+ | gene-YMR044W_MUCL30387 | rna-NM_001182541.1_MUCL30387 | cds-NP_013758.1_MUCL30387 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005451.1:347533-348969:+ | gene-YMR044W_MUCL30388 | rna-NM_001182541.1_MUCL30388 | cds-NP_013758.1_MUCL30388 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005291.1:338209-339633:+ | gene-YMR044W_MUCL39482 | rna-NM_001182541.1_MUCL39482 | cds-NP_013758.1_MUCL39482 | 98.8 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005435.1:344021-345457:+ | gene-YMR044W_MUCL42920 | rna-NM_001182541.1_MUCL42920 | cds-NP_013758.1_MUCL42920 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011822.1:355338-356765:+ | gene-YMR044W_NCIM3186 | rna-NM_001182541.1_NCIM3186 | cds-NP_013758.1_NCIM3186 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005275.1:338120-339544:+ | gene-YMR044W_NCYC1407 | rna-NM_001182541.1_NCYC1407 | cds-NP_013758.1_NCYC1407 | 98.8 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994152.1:344063-345490:+ | gene-YMR044W_PE2H3 | rna-NM_001182541.1_PE2H3 | cds-NP_013758.1_PE2H3 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999884.1:350158-351585:+ | gene-YMR044W_PE2H4 | rna-NM_001182541.1_PE2H4 | cds-NP_013758.1_PE2H4 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001145.3:355384-356811:+ | gene-YMR044W_S288C | rna-NM_001182541.1_S288C | cds-NP_013758.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000005.1:181448-182875:- | gene-YMR044W_SA1 | rna-NM_001182541.1_SA1 | cds-NP_013758.1_SA1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005499.1:338006-339430:+ | gene-YMR044W_ThermosaccDry | rna-NM_001182541.1_ThermosaccDry | cds-NP_013758.1_ThermosaccDry | 99.0 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005467.1:342711-344147:+ | gene-YMR044W_VR1 | rna-NM_001182541.1_VR1 | cds-NP_013758.1_VR1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000027.1:317011-318447:+ | gene-YMR044W_ZTW1 | rna-NM_001182541.1_ZTW1 | cds-NP_013758.1_ZTW1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047499.1:350910-352346:+ | gene-YMR044W_Sparadoxus | rna-NM_001182541.1_Sparadoxus | cds-NP_013758.1_Sparadoxus | 86.1 | 99.2 | Verified | 1 | 1 | 1 | False | True | False | False | False |