Gene name: IOC3
Reference locus (S288C): YFR013W
Gene biotype: protein_coding
Description: ISWI one complex protein 3; Subunit of the Isw1a complex; Isw1a has nucleosome-stimulated ATPase activity and represses transcription initiation by specific positioning of a promoter proximal dinucleosome; promotes nucleosome shifts in the 5 prime direction; IOC3 has a paralog, ESC8, that arose from the whole genome duplication
Top 10 interactors (score): ISW1 (0.999); IOC2 (0.995); IOC4 (0.994); ITC1 (0.969); DLS1 (0.954); DPB4 (0.936); CHD1 (0.862); ISW2 (0.821); NHP6B (0.769); RSC8 (0.745); SNF2 (0.717); YFR012W-A (0.717); DCV1 (0.717); YGR146C-A (0.692); RSC2 (0.684); SIN3 (0.671); RSC4 (0.657); HHT1 (0.629); HHT2 (0.621); NAT2 (0.611)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005300.1:160333-162696:+ | gene-YFR013W_AKU4011 | rna-NM_001179978.1_AKU4011 | cds-NP_116668.1_AKU4011 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000071.1:98143-100506:- | gene-YFR013W_BG1 | rna-NM_001179978.1_BG1 | cds-NP_116668.1_BG1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005508.1:160752-163115:+ | gene-YFR013W_Bruggeman | rna-NM_001179978.1_Bruggeman | cds-NP_116668.1_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005524.1:165664-168027:+ | gene-YFR013W_CAT1 | rna-NM_001179978.1_CAT1 | cds-NP_116668.1_CAT1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005364.1:161157-163520:+ | gene-YFR013W_CBS1585 | rna-NM_001179978.1_CBS1585 | cds-NP_116668.1_CBS1585 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005348.1:134999-137362:+ | gene-YFR013W_CBS436 | rna-NM_001179978.1_CBS436 | cds-NP_116668.1_CBS436 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005332.1:160897-163260:+ | gene-YFR013W_CBS6412 | rna-NM_001179978.1_CBS6412 | cds-NP_116668.1_CBS6412 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005316.1:163410-165773:+ | gene-YFR013W_CBS6413 | rna-NM_001179978.1_CBS6413 | cds-NP_116668.1_CBS6413 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001527.1:166021-168384:+ | gene-YFR013W_CENPK1137D | rna-NM_001179978.1_CENPK1137D | cds-NP_116668.1_CENPK1137D | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005476.1:159328-161691:+ | gene-YFR013W_EthanolRed | rna-NM_001179978.1_EthanolRed | cds-NP_116668.1_EthanolRed | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005540.1:160975-163338:+ | gene-YFR013W_FaliES1 | rna-NM_001179978.1_FaliES1 | cds-NP_116668.1_FaliES1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000452.1:7814-10177:+ | gene-YFR013W_JAY291 | rna-NM_001179978.1_JAY291 | cds-NP_116668.1_JAY291 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005412.1:162703-165066:+ | gene-YFR013W_MUCL30387 | rna-NM_001179978.1_MUCL30387 | cds-NP_116668.1_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005444.1:159510-161873:+ | gene-YFR013W_MUCL30388 | rna-NM_001179978.1_MUCL30388 | cds-NP_116668.1_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005284.1:159600-161963:+ | gene-YFR013W_MUCL39482 | rna-NM_001179978.1_MUCL39482 | cds-NP_116668.1_MUCL39482 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005428.1:158866-161229:+ | gene-YFR013W_MUCL42920 | rna-NM_001179978.1_MUCL42920 | cds-NP_116668.1_MUCL42920 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011815.1:169921-172284:+ | gene-YFR013W_NCIM3186 | rna-NM_001179978.1_NCIM3186 | cds-NP_116668.1_NCIM3186 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005268.1:160618-162981:+ | gene-YFR013W_NCYC1407 | rna-NM_001179978.1_NCYC1407 | cds-NP_116668.1_NCYC1407 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994145.1:179693-182056:+ | gene-YFR013W_PE2H3 | rna-NM_001179978.1_PE2H3 | cds-NP_116668.1_PE2H3 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999877.1:179241-181604:+ | gene-YFR013W_PE2H4 | rna-NM_001179978.1_PE2H4 | cds-NP_116668.1_PE2H4 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001138.5:169922-172285:+ | gene-YFR013W_S288C | rna-NM_001179978.1_S288C | cds-NP_116668.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000011.1:151963-154326:- | gene-YFR013W_SA1 | rna-NM_001179978.1_SA1 | cds-NP_116668.1_SA1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005492.1:160133-162496:+ | gene-YFR013W_ThermosaccDry | rna-NM_001179978.1_ThermosaccDry | cds-NP_116668.1_ThermosaccDry | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005460.1:175590-177953:+ | gene-YFR013W_VR1 | rna-NM_001179978.1_VR1 | cds-NP_116668.1_VR1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000013.1:90574-92937:+ | gene-YFR013W_ZTW1 | rna-NM_001179978.1_ZTW1 | cds-NP_116668.1_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047492.1:184488-186863:+ | gene-YFR013W_Sparadoxus | rna-NM_001179978.1_Sparadoxus | cds-NP_116668.1_Sparadoxus | 89.3 | 99.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |